View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4694_low_2 (Length: 526)
Name: NF4694_low_2
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 54175428 - 54175197
Alignment:
| Q |
19 |
aagatagcaccaatatttacaaaagagggtcttgaaaatgagacatttgaataaacttgttccaaataggggagcataaacagaaacaccagacacaccc |
118 |
Q |
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| T |
54175428 |
aagatagcaccaatatttacaaaagagggtcttgaa---------tttgaataaacttgttccaaataggggagcataaacagaaacaccagccacagcc |
54175338 |
T |
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| Q |
119 |
agtaataataaaaattcatatctaaaaaatagtaaactaaattagttaaacaa-ggtcaatgatatataatgaaatagataagtatgcagcatgcattag |
217 |
Q |
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| T |
54175337 |
agtaataataaaaattcatatctaaaaa-tagtaaactaaattagttaaacaaaggtcaatgatatataatgaaatagataagtatgcagcatgcattag |
54175239 |
T |
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| Q |
218 |
tttagtaatgagaaaatggaaaagttgaagaagacaagcaac |
259 |
Q |
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| T |
54175238 |
tttagtaatgagaaaatggaaaacttgaagaagacaagcaac |
54175197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 396 - 513
Target Start/End: Complemental strand, 54175090 - 54174973
Alignment:
| Q |
396 |
aaagaggaaaaaacaaagttgcttaaccaataccaagtgttattatgtcggttggtctgaagagtgaaaaatggtatttggtgttgagaatgagaacaaa |
495 |
Q |
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| T |
54175090 |
aaagaggaaaaaacaaagttgcttaaccaataccaagtgttattatgtcggttggtctgaagagtgaaaaatggtatttggtggtgagaatgagaacaaa |
54174991 |
T |
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| Q |
496 |
caacacctgggaatggga |
513 |
Q |
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| T |
54174990 |
caacacctgggaatggga |
54174973 |
T |
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