View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4694_low_5 (Length: 336)
Name: NF4694_low_5
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 27430355 - 27430027
Alignment:
| Q |
1 |
tcatccttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacacca |
100 |
Q |
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|||| |||||||||||||||||| | ||||||||||| | |||| |||| ||| || ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
27430355 |
tcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacacca |
27430256 |
T |
|
| Q |
101 |
gccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430255 |
gccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattgttcatcctcctc |
27430156 |
T |
|
| Q |
201 |
cttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430155 |
cttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaa |
27430056 |
T |
|
| Q |
301 |
cattcctgatatcatgtatgatgatgtcc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
27430055 |
cattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 155 - 329
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
155 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
254 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
|
| Q |
255 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
329 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 27447602 - 27447476
Alignment:
| Q |
1 |
tcatccttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacacca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27447602 |
tcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacacca |
27447503 |
T |
|
| Q |
101 |
gccaaacaagattgcccttttctctca |
127 |
Q |
| |
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||||||||||| || |||||||||||| |
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|
| T |
27447502 |
gccaaacaagactgtccttttctctca |
27447476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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