View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4694_low_6 (Length: 286)
Name: NF4694_low_6
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 54175428 - 54175196
Alignment:
| Q |
19 |
aagatagcaccaatatttacaaaagagggtcttgaaaatgagacatttgaataaacttgttccaaataggggagcataaacagaaacaccagacacaccc |
118 |
Q |
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| T |
54175428 |
aagatagcaccaatatttacaaaagagggtcttgaa---------tttgaataaacttgttccaaataggggagcataaacagaaacaccagccacagcc |
54175338 |
T |
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| Q |
119 |
agtaataataaaaattcatatctaaaaaatagtaaactaaattagttaaacaa-ggtcaatgatatataatgaaatagataagtatgcagcatgcattag |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54175337 |
agtaataataaaaattcatatctaaaaa-tagtaaactaaattagttaaacaaaggtcaatgatatataatgaaatagataagtatgcagcatgcattag |
54175239 |
T |
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| Q |
218 |
tttagtaatgagaaaatggaaaagttgaagaagacaagcaaca |
260 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54175238 |
tttagtaatgagaaaatggaaaacttgaagaagacaagcaaca |
54175196 |
T |
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