View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4694_low_9 (Length: 248)
Name: NF4694_low_9
Description: NF4694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4694_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 15590497 - 15590313
Alignment:
| Q |
48 |
aatggaagaaattactatccaaaatagttgaagatggacccttaatagaggattttactaaaaattatatgggtaaattgtggatttaaaattactatcc |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| || |||| ||||||||||||||| |
|
|
| T |
15590497 |
aatggaaggaattactatccaaaatagttgaagatggatccttaatagaggattttactaaaaatgataagggtaagttatggaattaaaattactatcc |
15590398 |
T |
|
| Q |
148 |
aaaacagtcctttctattatagagtttaacaaaattaattacttttaagtgtctttcaattaatctgttccttacaatttaaaat |
232 |
Q |
| |
|
||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15590397 |
aaaacagacatttatattacagagtttaacaaaactaattacttttaagtgtttttcaattaatctgttccttacaatttaaaat |
15590313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University