View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4695-Insertion-2 (Length: 910)

Name: NF4695-Insertion-2
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4695-Insertion-2
NF4695-Insertion-2
[»] chr8 (11 HSPs)
chr8 (8-572)||(13024831-13025397)
chr8 (729-867)||(13026330-13026468)
chr8 (117-481)||(18096229-18096599)
chr8 (322-492)||(18081792-18081962)
chr8 (240-297)||(12712113-12712170)
chr8 (248-297)||(6117562-6117611)
chr8 (240-301)||(18139784-18139845)
chr8 (242-298)||(12724620-12724676)
chr8 (248-295)||(12705461-12705508)
chr8 (437-492)||(18139876-18139931)
chr8 (441-486)||(26606662-26606707)
[»] chr1 (2 HSPs)
chr1 (227-299)||(17747850-17747923)
chr1 (233-300)||(22535498-22535565)


Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Original strand, 13024831 - 13025397
Alignment:
Q  8 aaaatcaggtgtctggttgtaattagtgatgtaagaaagagatccatttaattccaccaatcccattttcatccgtttatattttatatctgagttagag 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13024831 aaaatcaggcgtctggttgtaattagtgatgtaagaaagagatccatctaattccaccaatcccattttcatctgtttatattttatatctgagttagag 13024930  T
Q  108 ggtaatggtgttgcaacgaatgtctctttgctaaagtcaaacgacaccataacaggtccttcaatcgacaaccaatggcaaaatccattcatgttcacga 207  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13024931 ggtaatggtgttgcaacgaatgtctctttggtaaagtcaaacaacaccataacaggtccttcaatcgacaaccaatggcaaaatccattcatgttcacga 13025030  T
Q  208 gagaatgtgggcaagaagcaggcatatcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaa 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13025031 gagaacgtgggcaagaagcaggcatatcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaa 13025130  T
Q  308 tatgagcnnnnnnncctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatca 407  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13025131 tatgagctttttttcctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggaaaataaacccaatca 13025230  T
Q  408 ccacttcgaaattctaagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataaccaaatccataaggagtatagttgaagtgaa 507  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13025231 ccacttcgaaattctaagggataataaaccttccaaatcaccttaaaatcatcactaacagagtcataaccaaatccataaggagtatagttgaagtgaa 13025330  T
Q  508 tgttttcgtgcggttgatagctaggaggaacgaccttaaat--agcggtagcagggttccacaatac 572  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  13025331 tgttttcgtgtggttgatagctaggaggaacgaccttaaattcagcggtagcagggtttcacaatac 13025397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 729 - 867
Target Start/End: Original strand, 13026330 - 13026468
Alignment:
Q  729 tgtaattgatgggtgctatgttcataattgaattacgtgcttgtagattatttgaaatggacacaaacgacgaatgaatccaatcttccattcagtgttt 828  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13026330 tgtaattgatgggtgctatgttcataattgaattacgtgcttgtagattatttgaaatggacacaaacgacgaatgaatccaatcttccattcagtgttt 13026429  T
Q  829 taaaaactggcttagtaatcaacctggtaatgatactga 867  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  13026430 taaaaactggcttagtaatcaacctggtaatggtactga 13026468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 117 - 481
Target Start/End: Complemental strand, 18096599 - 18096229
Alignment:
Q  117 gttgcaacgaatgtctctttgctaaagtcaaacgacaccataacaggtccttcaatcgacaaccaatggcaaaatccattcatgttcacgagagaatgt- 215  Q
    ||||||||||||||||| ||||||||||| || ||||| | | |||||||||   ||   ||||| |||||||||||||||| |||||| | |||   |     
T  18096599 gttgcaacgaatgtctccttgctaaagtcgaaggacactacatcaggtccttgggtc---aaccagtggcaaaatccattcaagttcaccatagacatta 18096503  T
Q  216 -----gggcaagaagcaggcatatcaacc---ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaa 307  Q
         ||| ||||| ||||||||||| |    ||||| |||||||||||||||| ||  ||||||||||| |||||| | || || |||||||| ||||     
T  18096502 taccagggtaagaaacaggcatatcatcaaatccatcaagtttcctccaagaatcacgcttgaggctatacatctcccaaaatggttcatacaacttgac 18096403  T
Q  308 tatgagcnnnnnnncctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatca 407  Q
     ||||||       |||||||||||| ||||||||  || || | ||| |||||  ||||||||||||| |||||||||| ||| ||| |||||||||||    
T  18096402 aatgagccccttctcctcccaaaaaccgtcattcatgtcaaggttgtgtacatcagtctcccaaaaagggtcatccttgttcggtaaacaaacccaatca 18096303  T
Q  408 ccacttcgaaattctaagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataaccaaa 481  Q
     ||| |  |||||||||||||||   |||||||||||||||||||||||||||   |||| |||||||||||||    
T  18096302 tcaccttcaaattctaagggatatctaaccttccgaatcaccttaaaatcatctgaaacacagtcataaccaaa 18096229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 322 - 492
Target Start/End: Complemental strand, 18081962 - 18081792
Alignment:
Q  322 cctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattc 421  Q
    |||||||||||  |||| |||| || || | ||| |||||  ||||||||||||| |||||||||||||||||| ||||||||||| ||| |  ||||||    
T  18081962 cctcccaaaaatcgtcaatcaagtcaaggtggtgtacatcaatctcccaaaaagggtcatccttgtccggcaaacaaacccaatcatcaccttcaaattc 18081863  T
Q  422 taagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataaccaaatccataaggag 492  Q
     ||||||||   |||||| |||||||||||| |||||||  ||||| | ||||||||||| |||| |||||    
T  18081862 aaagggatacctaaccttacgaatcaccttataatcatctgtaacacaatcataaccaaacccatgaggag 18081792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 12712113 - 12712170
Alignment:
Q  240 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcat 297  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  12712113 ccatcgattttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 12712170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 6117611 - 6117562
Alignment:
Q  248 tttcctccaagaattacttttgaggctataaatctccgagaaagggtcat 297  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  6117611 tttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 6117562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 18139784 - 18139845
Alignment:
Q  240 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaa 301  Q
    ||||| |||||||||||||||| ||||||||| ||||| |||||| | ||||| ||||||||    
T  18139784 ccatcaagtttcctccaagaatcacttttgagactatatatctcccaaaaaggttcatacaa 18139845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 12724676 - 12724620
Alignment:
Q  242 atcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcata 298  Q
    |||||||||||||||||| |||||| |||||||||| |||||| |||| || |||||    
T  12724676 atcgagtttcctccaagagttacttctgaggctatatatctccaagaatggttcata 12724620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 12705508 - 12705461
Alignment:
Q  248 tttcctccaagaattacttttgaggctataaatctccgagaaagggtc 295  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  12705508 tttcctccaagagttacttttgaggctatataactcccagaaagggtc 12705461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 492
Target Start/End: Original strand, 18139876 - 18139931
Alignment:
Q  437 cttccgaatcaccttaaaatcatcactaacagagtcataaccaaatccataaggag 492  Q
    |||||||||||||||||||||||   ||||| ||||||||||||| |||| |||||    
T  18139876 cttccgaatcaccttaaaatcattcgtaacacagtcataaccaaacccatgaggag 18139931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 26606707 - 26606662
Alignment:
Q  441 cgaatcaccttaaaatcatcactaacagagtcataaccaaatccat 486  Q
    |||||||||||  ||||||| |||||||| ||||||||||||||||    
T  26606707 cgaatcaccttgtaatcatctctaacagaatcataaccaaatccat 26606662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 17747923 - 17747850
Alignment:
Q  227 aggcatatcaaccccatcga-gtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatac 299  Q
    ||||||||||||||||| || ||||||||||||| |||||| |||||||||| |||||  ||||||||||||||    
T  17747923 aggcatatcaaccccattgaagtttcctccaagagttacttatgaggctatatatctcacagaaagggtcatac 17747850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 22535498 - 22535565
Alignment:
Q  233 atcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcataca 300  Q
    |||||| ||||| |||||||||||||| |||||| | ||||| || |||||| | |||||||||||||    
T  22535498 atcaacaccatcaagtttcctccaagagttacttctaaggctgtatatctcccaaaaagggtcataca 22535565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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