View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695-Insertion-3 (Length: 831)
Name: NF4695-Insertion-3
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695-Insertion-3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 8 - 831
Target Start/End: Original strand, 8251835 - 8252658
Alignment:
| Q |
8 |
gtttttgcttatttggtggcttctggcgttttgttttctcatgtcccgtctgctcctcttgagttgattggtgagttattcatacacacaactctctcag |
107 |
Q |
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| T |
8251835 |
gtttttgcttatttggtggcttctggcgttttgttttctcatgtcccgtctgctcctcttgagttgattggtgagttattcatacacacaactctctcag |
8251934 |
T |
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| Q |
108 |
gtttttattacatcttagaagattgaaatcaaggcaaaaaccaaaggattcttaagatccttaaggaaaatattttgttacttatcttcannnnnnnnnn |
207 |
Q |
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| T |
8251935 |
gtttttattacatcttagaagattgaaatcaaggcaaaaaccaaaagattcttaag---------gaaaatattttgttacttatcttcatcactttttt |
8252025 |
T |
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| Q |
208 |
n---------ccactctcttgcttggatttgagtacccattacagtcttcttacttttctagttttagttatgagcatatagttttagttattataatgc |
298 |
Q |
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| T |
8252026 |
ttttttttttccgctctcttgcttggatttgagtacccattacagtcttcttacttttctagttttagttatgagcatatagttttagttattataatgc |
8252125 |
T |
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| Q |
299 |
aatgttctaagaaccgaggtaagttcaggagacccttgacatcataaaaagtatcacatatgnnnnnnnnnnnaaattattaacaagtgccgtaaaggca |
398 |
Q |
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| T |
8252126 |
aatgttctaagaacggaggtaagttcaggagacccttgacatcataaaaagtatcacatatatttctatttttaaattattaacaagtgccgtaagggta |
8252225 |
T |
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| Q |
399 |
gagcacaaatataaactataaaccacaccttattacgattcaacaaagtcaacatatatcataatcattgtcctactaggaaaactgaattactagttgg |
498 |
Q |
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| T |
8252226 |
aagcataaatataaactataaaccacaccttataccgattcaacaaagtcaacatatatcataatcattgtcctactaggaaaactgaattactagttgg |
8252325 |
T |
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| Q |
499 |
ctgcagatattaaatgcatgcaaatgcaatagattcatacagttattagctgcaatgtttggtaaagcactcattgcattttagctccattattacatga |
598 |
Q |
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| T |
8252326 |
ctgcagatattaaatgcatgcaaatgcaatagattcatacagttattagctgcaatgtttggtaaagcactcattgcattttagctccattattacatga |
8252425 |
T |
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| Q |
599 |
tctcaagcataaataggctttacattttcttgtttccggtactaaccaaatctatatattgttcttttaatgaagttcccaattttcactacacttatcc |
698 |
Q |
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| T |
8252426 |
tctcaagcataaataggctttacattttcttgtttccggtactaaccaaaacaatatattgttcttttaatgaagttcccaattttcactacaattatcc |
8252525 |
T |
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| Q |
699 |
tctttttgacgatgctttttgctatttttagcaaaacaaaagctattttgaaactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattc |
798 |
Q |
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| T |
8252526 |
tctttttgacgatgctttttgctatttttagcaaaacaaaagctattttgaaactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattc |
8252625 |
T |
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| Q |
799 |
aatcatggatactggaaataacaacaacaggcc |
831 |
Q |
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| T |
8252626 |
aatcatggatactggaaataacaacaacaggcc |
8252658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 730 - 827
Target Start/End: Original strand, 8242581 - 8242678
Alignment:
| Q |
730 |
caaaacaaaagctattttgaaactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatactggaaataacaacaaca |
827 |
Q |
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| T |
8242581 |
caaaacaaatgctgttttgaaacttccaccaaatactaatattccagcagtgtttgtgtttggagattcaatcatggatactggaaataacaacaaca |
8242678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 732 - 823
Target Start/End: Original strand, 8270132 - 8270223
Alignment:
| Q |
732 |
aaacaaaagctattttgaaactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatactggaaataacaac |
823 |
Q |
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| T |
8270132 |
aaacaaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaac |
8270223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 827
Target Start/End: Original strand, 8230999 - 8231076
Alignment:
| Q |
750 |
aactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatactggaaataacaacaaca |
827 |
Q |
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| T |
8230999 |
aacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaaca |
8231076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 755 - 810
Target Start/End: Original strand, 53274199 - 53274254
Alignment:
| Q |
755 |
ccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatac |
810 |
Q |
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| T |
53274199 |
ccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
53274254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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