View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4695-Insertion-4 (Length: 783)

Name: NF4695-Insertion-4
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4695-Insertion-4
NF4695-Insertion-4
[»] chr8 (1 HSPs)
chr8 (6-783)||(29607214-29607991)


Alignment Details
Target: chr8 (Bit Score: 762; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 6 - 783
Target Start/End: Complemental strand, 29607991 - 29607214
Alignment:
Q  6 caattgcagctacacgattgtgggttgtgagcttaaaatcatgtcaatgggggaaatagtctaatagtatacaatattatgggccaacaattgattcata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607991 caattgcagctacacgattgtgggttgtgagcttaaaatcatgtcaatgggggaaatagtctaatagtatacaatattatgggccaacaattgattcata 29607892  T
Q  106 ttgcagttatatttaactttttagtaagtttttcttcatgctcatatttaatttttaacacatgtatatttgtaagtactggtttgcatatacttaagtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607891 ttgcagttatatttaactttttagtaagtttttcttcatgctcatatttaatttttaacacatgtatatttgtaagtactggtttgcatatacttaagtt 29607792  T
Q  206 attttaagcaatttgggcgttcatgatctcatatttaagtttgcatttcttgataactcaaaatctcatatcactattattgcttgagcaaagaccacaa 305  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607791 attttaagcaatttgggcgttcatgatctcatatttaactttgcatttcttgataactcaaaatctcatatcactattattgcttgagcaaagaccacaa 29607692  T
Q  306 tacaatgaaagaacaaaaggataagaaaaatattatgagtataattgttcatcattcaattccatacatatgaaataattttatatttttgcaaaccaaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607691 tacaatgaaagaacaaaaggataagaaaaatattatgagtataattgttcatcattcaattccatacatatgaaataattttatatttttgcaaaccaaa 29607592  T
Q  406 taaccgtttcgctcgaatccatgttttgtcatatgagcatcttctgcagttactcaagtgacacataacaaaatggcaatagcaattccaccagttgcca 505  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607591 taaccgtttcgcttgaatccatgttttgtcatatgagcatcttctgcagttactcaagtgacacataacaaaatggcaatagcaattccaccagttgcca 29607492  T
Q  506 acatctttctccattgcccttggtaagattgtgcaccattctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtca 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607491 acatctttctccattgcccttggtaagattgtgcaccattctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtca 29607392  T
Q  606 gagtacaatctgtctgataaagatcagatgacaaagattgcatgaattcgttaatgcggcataatccagaccaaagaggtccgtaaatatagaattgtaa 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29607391 gagtacaatctgtctgataaagatcagatgacaaagattgcatgaattcgttaatgcggcatgatccagaccaaagaggtccgtaaatatagaattgtaa 29607292  T
Q  706 cttaaagtaaaatggaaaaggatattaccgcactgggactgggtgctggtgacggtccttcatctgaactcattgtag 783  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607291 cttaaagtaaaatggaaaaagatattaccgcactgggactgggtgctggtgacggtccttcatctgaactcattgtag 29607214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University