View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695-Insertion-5 (Length: 571)
Name: NF4695-Insertion-5
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695-Insertion-5 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 571
Target Start/End: Complemental strand, 4141923 - 4141360
Alignment:
| Q |
8 |
agaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggtttt |
107 |
Q |
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| T |
4141923 |
agaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggtttt |
4141824 |
T |
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| Q |
108 |
gcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaattatg |
207 |
Q |
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| T |
4141823 |
gcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaattatg |
4141724 |
T |
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| Q |
208 |
cattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgct |
307 |
Q |
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| T |
4141723 |
cattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgct |
4141624 |
T |
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| Q |
308 |
caaggatgcacaaattttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaagaacgaca |
407 |
Q |
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| T |
4141623 |
caaggatgcacaaatcttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacgaca |
4141524 |
T |
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| Q |
408 |
aagttataggagtgtagagcaaaatgaattacttatattgaactggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgcagatgaa |
507 |
Q |
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| T |
4141523 |
aagttataggagtgtagagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgcagatgaa |
4141424 |
T |
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| Q |
508 |
taacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgata |
571 |
Q |
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| T |
4141423 |
taacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgata |
4141360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
63 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
157 |
Q |
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| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
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| Q |
158 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
209 |
Q |
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| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 4157727 - 4157675
Alignment:
| Q |
14 |
tagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatg |
69 |
Q |
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| T |
4157727 |
tagatgtagtgct--gtcacttgagcataggattatttccca-gaaaggttacatg |
4157675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
292 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
328 |
Q |
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| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
299 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
351 |
Q |
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| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
| Q |
424 |
gagcaaaatgaattacttatattgaactggttttcta |
460 |
Q |
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| T |
3755121 |
gagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 100 - 327
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
| Q |
100 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
199 |
Q |
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| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
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| Q |
200 |
caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa |
299 |
Q |
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| T |
11082296 |
caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat |
11082384 |
T |
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| Q |
300 |
tgtatgctcaaggatgcacaaattttat |
327 |
Q |
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| T |
11082385 |
tgtatgctcaaggttacacaaatattat |
11082412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
104 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
177 |
Q |
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| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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