View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695-Insertion-6 (Length: 506)
Name: NF4695-Insertion-6
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 42716495 - 42716082
Alignment:
| Q |
7 |
agaactcacaagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaattcagataaagattcagggagtggaattcaagctgatcctc |
106 |
Q |
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| T |
42716495 |
agaactcataagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaattcagataaggattcagggagtggaattcaagctgatcctc |
42716396 |
T |
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| Q |
107 |
acgtgcttccatcttcatatgttaactttatagatggcagttacatttttaattacattaaccacaccaagtaatgatcttgttattttgtttcaagctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42716395 |
acgtgcttccatcttcatatgttaactttatagatggcagttacatttttaattacattaaccacaccaagtaatgattttgttattttgtttcaagctt |
42716296 |
T |
|
| Q |
207 |
gatgaattctacctagttttgatttcggatttggattgtttgcggtcagagttcagtgcaatcatgtagtcatgatatcaatagctattggatcaagatt |
306 |
Q |
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| T |
42716295 |
gatgaattctacctagttttgatttcggatttggattgtttgcggtcagagttcagtgcaatcatgtagtcatgatatcaatagctattggatcaagatt |
42716196 |
T |
|
| Q |
307 |
ggacggtacataatttaggctcagtttaaaatatgtatcgtcttatattgatccaaccatccactaatatcaagactgcacgagatttcaacaacattca |
406 |
Q |
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| T |
42716195 |
ggacggtacataatttaggctcagtttaaaatatgtatcgtcttatattgatccaaccatccactaatatcaagactgcacgagatttcaacaacattca |
42716096 |
T |
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| Q |
407 |
ttccaaaacctttg |
420 |
Q |
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| T |
42716095 |
ttccaaaacctttg |
42716082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42743080 - 42743028
Alignment:
| Q |
14 |
acaagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
66 |
Q |
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| T |
42743080 |
acaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaat |
42743028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42752439 - 42752387
Alignment:
| Q |
14 |
acaagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
66 |
Q |
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| T |
42752439 |
acaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaat |
42752387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42761907 - 42761855
Alignment:
| Q |
14 |
acaagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
66 |
Q |
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| T |
42761907 |
acaagggtgtggaagcttctcgtgtaggtgctattggaatgattttggctaat |
42761855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 42768855 - 42768796
Alignment:
| Q |
7 |
agaactcacaagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
66 |
Q |
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|||||| ||||||||||| |||||||| | | ||||||||||||||| |||||||||||| |
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| T |
42768855 |
agaactgacaagggtgtgcaagctgctagggcaggtgctgttggaatgattttggctaat |
42768796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 42735712 - 42735778
Alignment:
| Q |
96 |
agctgatcctcacgtgcttccatcttcatatgttaactttatagatggcagttacatttttaattac |
162 |
Q |
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| T |
42735712 |
agctgatgctcacgtgcttccagcttcaaatgttaatgttaccgatggaagttacatttttaattac |
42735778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 506
Target Start/End: Complemental strand, 42716027 - 42715996
Alignment:
| Q |
475 |
gtaggtctcctgtggcttacatttctaaagtg |
506 |
Q |
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| T |
42716027 |
gtaggtctcctgtggcttacatttctaaagtg |
42715996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 23041338 - 23041388
Alignment:
| Q |
16 |
aagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
66 |
Q |
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| T |
23041338 |
aagggtgtagaagcttctcgagtaggtgctgttggaatgattttggctaat |
23041388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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