View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4695_high_10 (Length: 259)
Name: NF4695_high_10
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695_high_10 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 5110923 - 5111163
Alignment:
| Q |
19 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5110923 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttc |
5111022 |
T |
|
| Q |
119 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5111023 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctc |
5111122 |
T |
|
| Q |
219 |
aactgggaaatctttctttccttgttgttcttgatttacaa |
259 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5111123 |
aattgggaaatctttctttccttgttgttcttgatttacaa |
5111163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 5093924 - 5094159
Alignment:
| Q |
23 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
122 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5093924 |
gatgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtctt |
5094023 |
T |
|
| Q |
123 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaact |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| | |
|
|
| T |
5094024 |
catgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaatt |
5094123 |
T |
|
| Q |
223 |
gggaaatctttctttccttgttgttcttgatttaca |
258 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5094124 |
gggaaatctttctttccttattgttcttgatttaca |
5094159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 5084148 - 5083908
Alignment:
| Q |
19 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
5084148 |
cacagatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttc |
5084049 |
T |
|
| Q |
119 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
5084048 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctc |
5083949 |
T |
|
| Q |
219 |
aactgggaaatctttctttccttgttgttcttgatttacaa |
259 |
Q |
| |
|
|| |||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
5083948 |
aattgggaaatctctctttccttgtatttcttgatctacaa |
5083908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 14427926 - 14427691
Alignment:
| Q |
23 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
14427926 |
gatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctctt |
14427827 |
T |
|
| Q |
123 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaact |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | |
|
|
| T |
14427826 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaatt |
14427727 |
T |
|
| Q |
223 |
gggaaatctttctttccttgttgttcttgatttaca |
258 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |
|
|
| T |
14427726 |
aggaaatctctctttccttgttgttcttgatctaca |
14427691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 16872369 - 16872553
Alignment:
| Q |
22 |
agatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaat---tggtcaatttcatcttctacttcttctttg |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||| | |
|
|
| T |
16872369 |
agatgaattttcacttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctacttctt---tc |
16872465 |
T |
|
| Q |
119 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
206 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
|
|
| T |
16872466 |
tcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 16873359 - 16873413
Alignment:
| Q |
198 |
ttgaaggtacaatttctcctcaactgggaaatctttctttccttgttgttcttga |
252 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttga |
16873413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University