View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695_high_11 (Length: 240)
Name: NF4695_high_11
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5111279 - 5111500
Alignment:
| Q |
1 |
tagcaaaacttcatcatttggatctttacttcaataattttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgag |
100 |
Q |
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| T |
5111279 |
tagcaaaacttcatcatttggatctttactttaataattttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgag |
5111378 |
T |
|
| Q |
101 |
tacaaatttcatcaaagaaactattccacatgctattggtcaacttgatcagttgaggattttggatattagtaataacatgctgtctggaatcatacca |
200 |
Q |
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| T |
5111379 |
tacaaatttcatcaaaggaaccattccacatgccattggtcaacttggtatgttgaggattttggatattagaaataacaagctctgtggaatcctacca |
5111478 |
T |
|
| Q |
201 |
acaacaatttccaacatgtctt |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
5111479 |
acaacaatatccaacatgtctt |
5111500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 5083753 - 5083571
Alignment:
| Q |
40 |
ttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaagaaactattccacatgctattgg |
139 |
Q |
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| T |
5083753 |
ttgttggagttattcctcaatctatatccaacttgtcaatgttagaatatctaaatttgaaatcaaatcacatcaaaggaaccattccacatgccattag |
5083654 |
T |
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| Q |
140 |
tcaacttgatcagttgaggattttggatattagtaataacatgctgtctggaatcataccaacaacaatttccaacatgtctt |
222 |
Q |
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| T |
5083653 |
tcaacttggtatgttgaggattttggatattagaaataacaagctctctggaatcctaccaacaacaatatccaacatgtctt |
5083571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 5094279 - 5094490
Alignment:
| Q |
4 |
caaaacttcatcatttggatctttacttcaataattttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtac |
103 |
Q |
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| T |
5094279 |
caaaacttcaacaattggatattagctataataatattgttggagttattcctcaatctatattcaacttgtcaatgttagaatatctacgtttga---- |
5094374 |
T |
|
| Q |
104 |
aaatttcatcaaagaaactattccacatgctattggtcaacttgatcagttgaggattttggatattagtaataaca---tgctgtctggaatcatacca |
200 |
Q |
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| T |
5094375 |
------catcaaaggaaccattccacatgcaattggtcaacttcgtcagttgaggtatttgagtattggtaataacaggttgctgtctggaatgatacca |
5094468 |
T |
|
| Q |
201 |
acaacaatttccaacatgtctt |
222 |
Q |
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| T |
5094469 |
acaacaatttgcaacatgtctt |
5094490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 16873495 - 16873576
Alignment:
| Q |
32 |
caataattttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaag |
117 |
Q |
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|||| |||||||||||| |||||||||||| || |||||||||||||| |||||||||||| || ||||| ||||||||| |
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| T |
16873495 |
caatgattttgttggagaaattcctcaatct----ccaacttgtcaatgttagagtacctagatttaagatcaaatctcatcaaag |
16873576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 16873580 - 16873608
Alignment:
| Q |
193 |
tcataccaacaacaatttccaacatgtct |
221 |
Q |
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| T |
16873580 |
tcataccaacaacaatttccaacatgtct |
16873608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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