View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695_high_4 (Length: 366)
Name: NF4695_high_4
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695_high_4 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 52724029 - 52724376
Alignment:
| Q |
1 |
agacgtttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52724029 |
agacttttcttcaattttcttcatgcatttgcttccaatcattgatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt |
52724128 |
T |
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| Q |
101 |
attggatcaaatgacacatgtctgatatgctattttggatca---taacaaattatcttaattgttgaacgggcaaaatatcactcaagctcatatgaat |
197 |
Q |
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| T |
52724129 |
attggatcaaatgacacatgtcccatgtgctattttggatcatagtaacaaattatcttaattgttgaacgggcgaaatatcactcaagctcatatgaat |
52724228 |
T |
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| Q |
198 |
atgataaataaatacttatctttgataacttcatcaaaatgacgttgttattgggaatttatgtctagaggagtactgtaggactttattactgacagtt |
297 |
Q |
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| T |
52724229 |
acgataaataaatacttatctttgataacttcatcaaaattacgttgttattgggaatttatgtctagatgag---tgtaggactttattactgacaatt |
52724325 |
T |
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| Q |
298 |
tctttgcaggagaatattaatgatgtttggacgtggatccctgacccttct |
348 |
Q |
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| T |
52724326 |
tctttgcaggagaatattaatgatgtttggacgtggatccctgacccttct |
52724376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 11587090 - 11587124
Alignment:
| Q |
274 |
tgtaggactttattactgacagtttctttgcagga |
308 |
Q |
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| T |
11587090 |
tgtagggctttattactgacagtttctttgcagga |
11587124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 5392 - 5538
Alignment:
| Q |
1 |
agacgtttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt |
100 |
Q |
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| T |
5392 |
agacttttcttcaataatcttcatgcctttgcttcccatcattggtcccttttatagaaggttaagagaatattttcttgttagttttattcccttaatt |
5491 |
T |
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| Q |
101 |
attggatcaaatgacacatgtctgatatgctattttggatcataaca |
147 |
Q |
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| T |
5492 |
attggatcaagtgatacatgtcccatgtgatattttggatcataaca |
5538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 3898 - 3752
Alignment:
| Q |
1 |
agacgtttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt |
100 |
Q |
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|||| |||||||||| ||||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3898 |
agacttttcttcaataatcttcatgcctttgcttcccatcattggtcccttttatagaaggttaagagaatattttcttgttagttttattcccttaatt |
3799 |
T |
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| Q |
101 |
attggatcaaatgacacatgtctgatatgctattttggatcataaca |
147 |
Q |
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| T |
3798 |
attggatcaagtgatacatgtcccatgtgatattttggatcataaca |
3752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 29346861 - 29347002
Alignment:
| Q |
6 |
tttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattgg |
105 |
Q |
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| T |
29346861 |
tttcatcatttttcttcatgcctttgcttcctatcattggtctcctttttagaaggttaagagattattttcttgttagttttattcccttaattattgg |
29346960 |
T |
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| Q |
106 |
atcaaatgacacatgtctgatatgctattttggatcataaca |
147 |
Q |
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| T |
29346961 |
atcaagtgacacatgtcccatgtgatattttggatcataaca |
29347002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 34960367 - 34960431
Alignment:
| Q |
46 |
tcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattggatcaaa |
111 |
Q |
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| T |
34960367 |
tcccttttatagatggttatgataatattttcttgttaattttaat-ccttaattattggatcaaa |
34960431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 46501768 - 46501632
Alignment:
| Q |
11 |
tcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattggatcaa |
110 |
Q |
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| T |
46501768 |
tcaatattctttatacctttgcttccaatcattggccccttttatagaagcttaagagaatattttcttgttagttttattcctttaattattggatcaa |
46501669 |
T |
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| Q |
111 |
atgacacatgtctgatatgctattttggatcataaca |
147 |
Q |
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| T |
46501668 |
gtgattcatgtcccatgtgctattttggatcataaca |
46501632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 44426571 - 44426611
Alignment:
| Q |
51 |
tttataaaaggttaagagaatattttcttgttggttttatt |
91 |
Q |
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| T |
44426571 |
tttatagaaggttaagagaatattttcttgttagttttatt |
44426611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 32756630 - 32756701
Alignment:
| Q |
75 |
ttcttgttggttttattcccttaattattggatcaaatgacacatgt-ctgatatgctattttggatcataa |
145 |
Q |
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| T |
32756630 |
ttcttgttagttatactcgcttaattattggatcaagtgacacatgtccccatgtgctattttggatcataa |
32756701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 14372883 - 14372917
Alignment:
| Q |
274 |
tgtaggactttattactgacagtttctttgcagga |
308 |
Q |
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| T |
14372883 |
tgtagggctttattactgacagtttctttgcagga |
14372917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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