View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695_low_12 (Length: 242)
Name: NF4695_low_12
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 14196291 - 14196517
Alignment:
| Q |
10 |
gatacttattagtagagtacccaatgataccattaaactgagaattttacatttttcattttgggataaagtggaaaaagtcttccttatt---gcattc |
106 |
Q |
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| T |
14196291 |
gatacttattggtagagtaccaaatgatgccattaaactgagaattttacatttttcattttgggataaagtgtaaaaagtcttccttactatggcagtc |
14196390 |
T |
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| Q |
107 |
attgatttgagagcattctgaagtgcaaaaattgtgcaggtgaaacattatgaagttttagaaatgcagaaagtattggagcaaaaagttctttttacta |
206 |
Q |
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| T |
14196391 |
attgatttgagagcattctgaagtgcgaaaattgtgcaggtgaaacattctgaagttttagaaatgcagaaaggattggaacaaaaagttctatttacta |
14196490 |
T |
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| Q |
207 |
caatagttagaagcaagagatgatgat |
233 |
Q |
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| T |
14196491 |
caataattagaagcaagagatgctgat |
14196517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 43040901 - 43041030
Alignment:
| Q |
104 |
ttcattgatttgagagcattctgaagtgcaaaaattgtgcaggtgaaacattatgaagttttagaaatgcagaaagtattggagcaaaaagttcttttta |
203 |
Q |
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| T |
43040901 |
ttcattgatttgagaacattctgaagtgcaaaaattgtgcaggtgaaacattctgaagttttagaaatgcagaaaggattggagcagaaagttcagtttt |
43041000 |
T |
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| Q |
204 |
ctacaatagttagaagcaagagatgatgat |
233 |
Q |
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| T |
43041001 |
ctacaatagttagaagcaagagatgctgat |
43041030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 37748190 - 37748138
Alignment:
| Q |
181 |
attggagcaaaaagttctttttactacaatagttagaagcaagagatgatgat |
233 |
Q |
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| T |
37748190 |
attggagcagaaagttcagttttctacaatagttagaagcaagagatgctgat |
37748138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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