View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4695_low_2 (Length: 423)
Name: NF4695_low_2
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4695_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 25 - 408
Target Start/End: Complemental strand, 3239162 - 3238779
Alignment:
| Q |
25 |
aattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaattaaaattgtcaacattcaa |
124 |
Q |
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| T |
3239162 |
aattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaattaaaattgtcaacattcaa |
3239063 |
T |
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| Q |
125 |
ataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctgnnnnnnntatcgaaaacatacaaaaattgagca |
224 |
Q |
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| T |
3239062 |
ataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctgaaaaaaatatcgaaaacatacaaaaattgagca |
3238963 |
T |
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| Q |
225 |
catgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaactttctgagtacgtcttagaatcacatt |
324 |
Q |
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| T |
3238962 |
catgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaactttctgagtacgtcttagaatcacatt |
3238863 |
T |
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| Q |
325 |
tggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttactgtttcagtgatgat |
408 |
Q |
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| T |
3238862 |
tggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttactgtttcagtgatgat |
3238779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 3243022 - 3242949
Alignment:
| Q |
300 |
tctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggga |
373 |
Q |
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| T |
3243022 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggga |
3242949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 3243306 - 3243141
Alignment:
| Q |
25 |
aattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaat---taaaattgtcaacatt |
121 |
Q |
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|||||| ||||||||| || |||||| |||||||||||||||||||||||||| |||| |||| |||||| ||||| ||| || ||||| |
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| T |
3243306 |
aattgtgagcaaggcattggcttgattagtaagagccaactcaagatttacata----tcttttccagtctttagaaaaatcagtaatatcagcaacaac |
3243211 |
T |
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| Q |
122 |
caaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctg |
191 |
Q |
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| T |
3243210 |
cgaaagaattgataatgacaagtaaccagagttgttctcgttcccttttggattcataacaatccgcctg |
3243141 |
T |
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