View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4695_low_4 (Length: 366)

Name: NF4695_low_4
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4695_low_4
NF4695_low_4
[»] chr4 (2 HSPs)
chr4 (1-348)||(52724029-52724376)
chr4 (274-308)||(11587090-11587124)
[»] scaffold0274 (1 HSPs)
scaffold0274 (1-147)||(5392-5538)
[»] scaffold0271 (1 HSPs)
scaffold0271 (1-147)||(3752-3898)
[»] chr7 (2 HSPs)
chr7 (6-147)||(29346861-29347002)
chr7 (46-111)||(34960367-34960431)
[»] chr1 (2 HSPs)
chr1 (11-147)||(46501632-46501768)
chr1 (51-91)||(44426571-44426611)
[»] chr3 (1 HSPs)
chr3 (75-145)||(32756630-32756701)
[»] chr6 (1 HSPs)
chr6 (274-308)||(14372883-14372917)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 52724029 - 52724376
Alignment:
Q  1 agacgtttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52724029 agacttttcttcaattttcttcatgcatttgcttccaatcattgatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt 52724128  T
Q  101 attggatcaaatgacacatgtctgatatgctattttggatca---taacaaattatcttaattgttgaacgggcaaaatatcactcaagctcatatgaat 197  Q
    ||||||||||||||||||||||  || |||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52724129 attggatcaaatgacacatgtcccatgtgctattttggatcatagtaacaaattatcttaattgttgaacgggcgaaatatcactcaagctcatatgaat 52724228  T
Q  198 atgataaataaatacttatctttgataacttcatcaaaatgacgttgttattgggaatttatgtctagaggagtactgtaggactttattactgacagtt 297  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||   ||||||||||||||||||||| ||    
T  52724229 acgataaataaatacttatctttgataacttcatcaaaattacgttgttattgggaatttatgtctagatgag---tgtaggactttattactgacaatt 52724325  T
Q  298 tctttgcaggagaatattaatgatgtttggacgtggatccctgacccttct 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52724326 tctttgcaggagaatattaatgatgtttggacgtggatccctgacccttct 52724376  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 11587090 - 11587124
Alignment:
Q  274 tgtaggactttattactgacagtttctttgcagga 308  Q
    |||||| ||||||||||||||||||||||||||||    
T  11587090 tgtagggctttattactgacagtttctttgcagga 11587124  T

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Target: scaffold0274 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 5392 - 5538
Alignment:
Q  1 agacgtttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt 100  Q
    |||| ||||||||||  ||||||||| ||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5392 agacttttcttcaataatcttcatgcctttgcttcccatcattggtcccttttatagaaggttaagagaatattttcttgttagttttattcccttaatt 5491  T
Q  101 attggatcaaatgacacatgtctgatatgctattttggatcataaca 147  Q
    |||||||||| ||| |||||||  || || |||||||||||||||||    
T  5492 attggatcaagtgatacatgtcccatgtgatattttggatcataaca 5538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 3898 - 3752
Alignment:
Q  1 agacgtttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaatt 100  Q
    |||| ||||||||||  ||||||||| ||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  3898 agacttttcttcaataatcttcatgcctttgcttcccatcattggtcccttttatagaaggttaagagaatattttcttgttagttttattcccttaatt 3799  T
Q  101 attggatcaaatgacacatgtctgatatgctattttggatcataaca 147  Q
    |||||||||| ||| |||||||  || || |||||||||||||||||    
T  3798 attggatcaagtgatacatgtcccatgtgatattttggatcataaca 3752  T

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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 29346861 - 29347002
Alignment:
Q  6 tttcttcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattgg 105  Q
    |||| ||| |||||||||||| ||||||||| ||||||  || | ||| || |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  29346861 tttcatcatttttcttcatgcctttgcttcctatcattggtctcctttttagaaggttaagagattattttcttgttagttttattcccttaattattgg 29346960  T
Q  106 atcaaatgacacatgtctgatatgctattttggatcataaca 147  Q
    ||||| |||||||||||  || || |||||||||||||||||    
T  29346961 atcaagtgacacatgtcccatgtgatattttggatcataaca 29347002  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 34960367 - 34960431
Alignment:
Q  46 tcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattggatcaaa 111  Q
    ||||||||||| | ||||| || ||||||||||||||  ||||| | |||||||||||||||||||    
T  34960367 tcccttttatagatggttatgataatattttcttgttaattttaat-ccttaattattggatcaaa 34960431  T

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Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 46501768 - 46501632
Alignment:
Q  11 tcaattttcttcatgcatttgcttccaatcattaatcccttttataaaaggttaagagaatattttcttgttggttttattcccttaattattggatcaa 110  Q
    ||||| ||||| || | ||||||||||||||||   |||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  46501768 tcaatattctttatacctttgcttccaatcattggccccttttatagaagcttaagagaatattttcttgttagttttattcctttaattattggatcaa 46501669  T
Q  111 atgacacatgtctgatatgctattttggatcataaca 147  Q
     |||  ||||||  || ||||||||||||||||||||    
T  46501668 gtgattcatgtcccatgtgctattttggatcataaca 46501632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 44426571 - 44426611
Alignment:
Q  51 tttataaaaggttaagagaatattttcttgttggttttatt 91  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  44426571 tttatagaaggttaagagaatattttcttgttagttttatt 44426611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 32756630 - 32756701
Alignment:
Q  75 ttcttgttggttttattcccttaattattggatcaaatgacacatgt-ctgatatgctattttggatcataa 145  Q
    |||||||| ||| || || ||||||||||||||||| |||||||||| |  || ||||||||||||||||||    
T  32756630 ttcttgttagttatactcgcttaattattggatcaagtgacacatgtccccatgtgctattttggatcataa 32756701  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 14372883 - 14372917
Alignment:
Q  274 tgtaggactttattactgacagtttctttgcagga 308  Q
    |||||| ||||||||||||||||||||||||||||    
T  14372883 tgtagggctttattactgacagtttctttgcagga 14372917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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