View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4695_low_5 (Length: 357)

Name: NF4695_low_5
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4695_low_5
NF4695_low_5
[»] chr6 (15 HSPs)
chr6 (12-224)||(23247216-23247428)
chr6 (50-224)||(23257601-23257778)
chr6 (54-224)||(23251628-23251798)
chr6 (12-224)||(23266162-23266371)
chr6 (70-223)||(23289582-23289729)
chr6 (270-339)||(23247101-23247170)
chr6 (270-339)||(23257486-23257555)
chr6 (70-223)||(23283239-23283389)
chr6 (112-212)||(23391074-23391174)
chr6 (270-324)||(23266062-23266116)
chr6 (270-339)||(23251512-23251581)
chr6 (87-170)||(23593009-23593092)
chr6 (112-214)||(23582849-23582948)
chr6 (112-214)||(23586732-23586831)
chr6 (131-166)||(23633835-23633870)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 23247428 - 23247216
Alignment:
Q  12 aatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgt 111  Q
    |||||||||||||||||||||||||| | | ||| ||||||||||||||||||||| ||||||| ||||||||||||||| || ||| || |||||||||    
T  23247428 aatactttaatgactaacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaacaggaggaaatgt 23247329  T
Q  112 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 211  Q
    |||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23247328 tgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatgagtatgacgatattcatgtacaagattttcaaga 23247229  T
Q  212 tgatgaggtatca 224  Q
    |||||||||||||    
T  23247228 tgatgaggtatca 23247216  T

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Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 23257778 - 23257601
Alignment:
Q  50 tgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatg 149  Q
    |||||| |||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  23257778 tgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatg 23257679  T
Q  150 tcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 224  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||    
T  23257678 tcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatca 23257601  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 23251798 - 23251628
Alignment:
Q  54 gtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtccc 153  Q
    ||||| ||| |||| ||||||| |||| |||| ||||| |||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23251798 gtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagag---gaagtgttgaatatgccagagttgtggaggaatatggcactaatgtccc 23251702  T
Q  154 ctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 224  Q
    ||||||||||||||| ||||||||   ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  23251701 ctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatca 23251628  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 23266371 - 23266162
Alignment:
Q  12 aatactttaatgactaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgt 111  Q
    |||||| |||||| || ||| ||||| | ||| | || ||| ||||||||||||||  |||||| |||||||||||||| ||||||      ||||||||    
T  23266371 aatactataatgattaccaacattgagactgttgtagctgttgtcgccacaaaggagttgaatatgttttgtgtggaagaagaaga------ggaaatgt 23266278  T
Q  112 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttca 208  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||| ||||| | ||||| |||||    
T  23266277 tgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttca 23266178  T
Q  209 agatgatgaggtatca 224  Q
    ||||||||||||||||    
T  23266177 agatgatgaggtatca 23266162  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 23289729 - 23289582
Alignment:
Q  70 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 169  Q
    |||||| ||||||||||||||| ||| ||||  ||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  23289729 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttga 23289630  T
Q  170 gtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 223  Q
    |   ||||||||||||||| || ||||||||   ||||||||||| ||||||||    
T  23289629 g---catgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatc 23289582  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 23247170 - 23247101
Alignment:
Q  270 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacatag 339  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23247170 ggattgtaggataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacatag 23247101  T

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Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 23257555 - 23257486
Alignment:
Q  270 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacatag 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23257555 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacatag 23257486  T

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Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 23283389 - 23283239
Alignment:
Q  70 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 169  Q
    |||||| ||||||||||||||| ||| ||||  ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||  | ||    
T  23283389 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatagtatgga 23283290  T
Q  170 gtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 223  Q
    |   |||||||||||| || || || ||||||| ||||||||||| ||||||||    
T  23283289 g---catgagtatgaaaattttgatttacaagactttcaagatgaagaggtatc 23283239  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
Q  112 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 211  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||| |||| |||||| |||||||||| ||||| ||||||||    
T  23391174 tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatgaatatgaaaatattcatgttcaagactttcaaga 23391075  T
Q  212 t 212  Q
    |    
T  23391074 t 23391074  T

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Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 23266116 - 23266062
Alignment:
Q  270 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266116 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaat 23266062  T

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Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 23251581 - 23251512
Alignment:
Q  270 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacatag 339  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  23251581 ggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacatag 23251512  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 23593092 - 23593009
Alignment:
Q  87 gaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgag 170  Q
    |||| |||| ||||| ||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  23593092 gaagaagaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag 23593009  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 23582948 - 23582849
Alignment:
Q  112 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 211  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| |||   |||| ||||||||    
T  23582948 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga 23582852  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 23586831 - 23586732
Alignment:
Q  112 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 211  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| |||   |||| ||||||||    
T  23586831 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga 23586735  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 23633870 - 23633835
Alignment:
Q  131 gaggaatatggcactaatgtcccctacacatagctt 166  Q
    |||||||||||| |||||||||||||||||||||||    
T  23633870 gaggaatatggctctaatgtcccctacacatagctt 23633835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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