View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4695_low_9 (Length: 308)

Name: NF4695_low_9
Description: NF4695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4695_low_9
NF4695_low_9
[»] chr7 (1 HSPs)
chr7 (2-292)||(36567778-36568076)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 36568076 - 36567778
Alignment:
Q  2 gtggagaagcaaagggtggtggttttgtggagaagggtttgaatttgaagatggaaaaatatggttgaattggaagaaccttgaagaagaagagaaaaga 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36568076 gtggtgaagaaaagggtggtggttttgtggagaagggtttgaatttgaagatggaaaaatatggttgaattggaagaaccttgaagaagaagagaaaaga 36567977  T
Q  102 ttagagtaagggttatcagccatggatatattatttgatgagagatcaagtgggaacagtttatggctagctacttgagttgtttgcttttat--nnnnn 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  36567976 ttagagtaagggttatcagccatggatatattatttgatgagagatcaagtgggaacagtttatggctagctacttgagttgtttgcttttatagagaga 36567877  T
Q  200 nnnnnnnnnnntacaagatggctgaaggaagtagtggacggtg------gagagagagaagtatcatcaaacatgggaaagctaaaggtaagtggtgtg 292  Q
               ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36567876 gagagagagagtacaagatggctgaaggaagtagtggacggtggagagagagagagagaagtatcatcaaacatgggaaagctaaaggtaagtggtgtg 36567778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University