View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4696-Insertion-2 (Length: 845)

Name: NF4696-Insertion-2
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4696-Insertion-2
NF4696-Insertion-2
[»] chr2 (3 HSPs)
chr2 (8-845)||(33077136-33077990)
chr2 (14-139)||(33068989-33069118)
chr2 (363-400)||(26227842-26227879)
[»] chr8 (2 HSPs)
chr8 (685-818)||(40818984-40819119)
chr8 (369-415)||(22721091-22721137)
[»] chr5 (2 HSPs)
chr5 (369-485)||(22553304-22553419)
chr5 (369-414)||(17344866-17344911)
[»] chr7 (4 HSPs)
chr7 (365-452)||(12168208-12168295)
chr7 (368-414)||(151796-151842)
chr7 (369-453)||(8231943-8232027)
chr7 (373-415)||(15826644-15826686)
[»] chr1 (3 HSPs)
chr1 (367-455)||(48955347-48955435)
chr1 (369-414)||(3368090-3368135)
chr1 (368-413)||(10884523-10884568)
[»] chr6 (5 HSPs)
chr6 (370-477)||(14283339-14283446)
chr6 (364-414)||(11182096-11182146)
chr6 (369-414)||(12404796-12404841)
chr6 (237-368)||(10744363-10744494)
chr6 (369-414)||(2637760-2637805)
[»] chr4 (6 HSPs)
chr4 (565-603)||(49360267-49360305)
chr4 (368-452)||(26253007-26253091)
chr4 (519-563)||(49360294-49360338)
chr4 (368-414)||(14043021-14043067)
chr4 (369-415)||(14044933-14044979)
chr4 (369-426)||(49360409-49360467)
[»] chr3 (4 HSPs)
chr3 (369-414)||(53359260-53359305)
chr3 (369-415)||(11422938-11422984)
chr3 (369-415)||(44893489-44893535)
chr3 (369-414)||(24398090-24398135)
[»] scaffold0103 (1 HSPs)
scaffold0103 (369-414)||(2204-2249)


Alignment Details
Target: chr2 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 845
Target Start/End: Original strand, 33077136 - 33077990
Alignment:
Q  8 atatagttgtttgatctacgtagctgattccaactcttcaatcgtaatttttagaatatttaatatacaacttttagtccactataattttagtgttttc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33077136 atatcgttgtttgatctacgtagctgattccaactcttcaatcataatttttagaatatttaatatacaaattttagtccactgtaattttagtgttttc 33077235  T
Q  108 caaacacatgtttagaatttaaatatccataaagttccttcacagttgattgtttcaacattcaactctcctcacaaagttccttcacaattgagaaacc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33077236 caaacacatgtttagcatttaaatatccataaagttccttcagagttgattgtttcaacattcatctctcctcacaaagttccttcacaattgagaaacc 33077335  T
Q  208 attggctccattgttaaatattgttaatgatttctctttgattgtgtctcctatcaacggggaagaaaatcattgtgcatacaagcttgttgattatact 307  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33077336 attggctccattgttaaatattatcaatgatttctctttgattgtgtctcctatcaacggggaagaaaatcattgtgcatacaagcttcttgattatact 33077435  T
Q  308 tttaatgtgtggggctttacttagtggaatgacattccttcttttgttagagatgacttttgaattctgctctttacccaacaaaaaatgctcgctctca 407  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33077436 tttaatgtgtggggctttacttagtggaatgacattctttcttttgttagagatgacttttgaattctgctctttacccaacaaaaattgctcgctctca 33077535  T
Q  408 actgaaatatcgaaattacctcagcgtaagttaactcatgctagttatattttctgcgggacttaagtcatgctgcgtaa--cacatcacgctgctttct 505  Q
    |||||||||||||||||||||| || | |||| | ||||||||||||| ||||||||  || |||| ||| ||||||| |   |  ||||||||||||||    
T  33077536 actgaaatatcgaaattacctctgcatgagttgattcatgctagttatgttttctgcatgagttaactcacgctgcgtgatttaactcacgctgctttct 33077635  T
Q  506 ttttctatcagtcgtgttgcttttcaaccaaaggtcagttgcgttgcttttcaatcttccttttcaatctttttgtcatatagtgaattaatggatgaat 605  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33077636 ttttctatcagtggtgttgcttttcaaccaaaggtcagttgcgttgcttttcaatcttccttttcaatctttttgtcatatagtgaattaatggatgaat 33077735  T
Q  606 gctgtttgctgcaaggaatccttattttatgtccacgatatttactgc--------cactactaatcatt-------aagtaattcattattttaacaga 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        || || |  || ||       |||||||||||||||||||||||    
T  33077736 gctgtttgctgcaaggaatccttattttatgtccacgatatttactgcaaggaattcattatttttccttaaaaaaaaagtaattcattattttaacaga 33077835  T
Q  691 taaactaactaatccgataaattgagccgcgttggctatgctaatctaatatttttataatctctgggacgtttctacgaccaatctatgctaaaacctg 790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  33077836 taaactaactaatccgataaattgagccgcgttggctatgctaatctaatattttaataatctttgggacgtttctacgaccaatttatgctaaaacctg 33077935  T
Q  791 ctttaatggaatctgaatcatatcattcctcttatgtcttccaagtctactactc 845  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33077936 ctttaatggaatctgaatcatatcattccacttatgtcttccaagtctactactc 33077990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 33068989 - 33069118
Alignment:
Q  14 ttgtttgatctacgtag----ctgattccaactcttcaatcgtaatttttagaatatttaatatacaacttttagtccactataattttagtgttttcca 109  Q
    |||||||||||||||||     |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  33068989 ttgtttgatctacgtagatgattgattccatctcttcaatcgtaattttttgaatatttaatatataacttttagtccactataatattagtgttttcca 33069088  T
Q  110 aacacatgtttagaatttaaatatccataa 139  Q
    ||||||||||||| ||||||||||||||||    
T  33069089 aacacatgtttagcatttaaatatccataa 33069118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 26227879 - 26227842
Alignment:
Q  363 acttttgaattctgctctttacccaacaaaaaatgctc 400  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  26227879 acttatgaatcctgctctttacccaacaaaaaatgctc 26227842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 685 - 818
Target Start/End: Complemental strand, 40819119 - 40818984
Alignment:
Q  685 aacagataaactaactaatccgataaattgagccgcgttggctatgctaatctaatatttttataatctctgggacgtttctacgaccaatctat--gct 782  Q
    |||| ||||||||| | ||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||   ||    
T  40819119 aacacataaactaagtcatccgaacaattgagccgcgttggcaatgctaatctaatatttttataatctgtgggacgtttctacgaccaatctattgcct 40819020  T
Q  783 aaaacctgctttaatggaatctgaatcatatcattc 818  Q
    ||||| ||||||||||| || |||||||||||||||    
T  40819019 aaaacgtgctttaatgggatatgaatcatatcattc 40818984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 22721091 - 22721137
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 415  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||||||    
T  22721091 gaattatgctctttacccaacaaaaattgctccctcccaactgaaat 22721137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 369 - 485
Target Start/End: Complemental strand, 22553419 - 22553304
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttatattttctgcggga 468  Q
    ||||||| |||||||||||||||||| ||| ||||| ||||||||||  ||||||| || | |||| |||||||||| ||||||||| || ||||||  |    
T  22553419 gaattctactctttacccaacaaaaattgcccgctcccaactgaaattccgaaattgcc-ctgcgtgagttaactcacgctagttatgttgtctgcgtaa 22553321  T
Q  469 cttaagtcatgctgcgt 485  Q
    ||||||||| |||||||    
T  22553320 cttaagtcacgctgcgt 22553304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 17344911 - 17344866
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    ||||| |||||||||||||| ||||| ||||||||| |||||||||    
T  17344911 gaattatgctctttacccaataaaaattgctcgctcccaactgaaa 17344866  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 12168208 - 12168295
Alignment:
Q  365 ttttgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagt 452  Q
    ||||||||||||||||||||||||||| || ||||||||| |||||||||    |||| |||||| ||  | ||||||||||||||||    
T  12168208 ttttgaattctgctctttacccaacaacaattgctcgctcccaactgaaaagatgaaaatacctctgcacatgttaactcatgctagt 12168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 151842 - 151796
Alignment:
Q  368 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||    
T  151842 tgaattctgctctttacccaacaaaaattgctcgctttcaattgaaa 151796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 8232027 - 8231943
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagtt 453  Q
    |||||||||||||||||||||| ||| ||| ||| | ||||||||||  ||||||| |  | |||| |||||||||| |||||||    
T  8232027 gaattctgctctttacccaacagaaattgcccgcccccaactgaaattccgaaattgcacctgcgtgagttaactcacgctagtt 8231943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 373 - 415
Target Start/End: Complemental strand, 15826686 - 15826644
Alignment:
Q  373 tctgctctttacccaacaaaaaatgctcgctctcaactgaaat 415  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||    
T  15826686 tctgctctttacccaacagaaattgctcgctcccaactgaaat 15826644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 48955347 - 48955435
Alignment:
Q  367 ttgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttat 455  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||||||   |||| | || | |||| |||||||||| |||||||||    
T  48955347 ttgaattctgctctttacccaacagaaattgctcgctcctaactgaaattctgaaactgcccctgcgtgagttaactcacgctagttat 48955435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 3368090 - 3368135
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  3368090 gaattatgctctttacccaacagaaattgctcgctcccaactgaaa 3368135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 10884568 - 10884523
Alignment:
Q  368 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaa 413  Q
    ||||||||||||||||||||| ||||| |||||  |||||||||||    
T  10884568 tgaattctgctctttacccaaaaaaaattgctcattctcaactgaa 10884523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 370 - 477
Target Start/End: Original strand, 14283339 - 14283446
Alignment:
Q  370 aattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttatattttctgcgggac 469  Q
    ||||||||||||||| ||||| ||| ||||||||| |||||||||   | | |||||| | |||| |||||||||| ||||||| | ||||||||  ||     
T  14283339 aattctgctctttactcaacagaaattgctcgctcccaactgaaaagaccatattacccctgcgtgagttaactcacgctagttgtgttttctgcatgag 14283438  T
Q  470 ttaagtca 477  Q
    ||||||||    
T  14283439 ttaagtca 14283446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 11182146 - 11182096
Alignment:
Q  364 cttttgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    |||||||||| |||||||||||||||||||| || |||||| |||||||||    
T  11182146 cttttgaattatgctctttacccaacaaaaattgttcgctcccaactgaaa 11182096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 12404796 - 12404841
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||    
T  12404796 gaattctgctctttacccaacaaaaattgctcgctcccaacagaaa 12404841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 368
Target Start/End: Complemental strand, 10744494 - 10744363
Alignment:
Q  237 atttctctttgattgtgtctcctatcaacggggaagaaaatcattgtgcatacaagcttgttgattatacttttaatgtgtggggctttacttagtggaa 336  Q
    |||||||||| |||||||||| |||| |   ||||| || |||||||||  | |||||||| || |||||||||   |||   | | || || |||||||    
T  10744494 atttctcttttattgtgtctcatatctattaggaaggaactcattgtgcggataagcttgtagactatacttttcgagtgcaagtcattgctcagtggaa 10744395  T
Q  337 tgacattccttcttttgttagagatgactttt 368  Q
    |||||||||||||||| ||| |||||||||||    
T  10744394 tgacattccttcttttattaaagatgactttt 10744363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 2637805 - 2637760
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    ||||||||||| |||||||||||||| ||||||||| ||| |||||    
T  2637805 gaattctgctccttacccaacaaaaattgctcgctcccaattgaaa 2637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 603
Target Start/End: Complemental strand, 49360305 - 49360267
Alignment:
Q  565 cttttcaatctttttgtcatatagtgaattaatggatga 603  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  49360305 cttttcaatctttttgtcatatagtgaattaatagatga 49360267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 26253091 - 26253007
Alignment:
Q  368 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagt 452  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||||||||  | | | || ||| |||| |||||||||| ||||||    
T  26253091 tgaattctgctctttatccaacagaaattgctcgctcccaactgaaatgacaataatatctctgcgtgagttaactcacgctagt 26253007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 49360338 - 49360294
Alignment:
Q  519 gtgttgcttttcaaccaaaggtcagttgcgttgcttttcaatctt 563  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||    
T  49360338 gtgttgcttttcaaccaaagaccagttgcattgcttttcaatctt 49360294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 14043021 - 14043067
Alignment:
Q  368 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    |||||||||||||||| |||||| ||| ||||||||| |||||||||    
T  14043021 tgaattctgctctttatccaacagaaattgctcgctcccaactgaaa 14043067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 14044979 - 14044933
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 415  Q
    |||||||| |||||||| || ||||||||||||||| ||||||||||    
T  14044979 gaattctgttctttaccaaataaaaaatgctcgctcccaactgaaat 14044933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 49360467 - 49360409
Alignment:
Q  369 gaattctgctctttacccaacaaaaaat-gctcgctctcaactgaaatatcgaaattac 426  Q
    |||| ||||||||||| ||||||| ||| |||||||| ||||||||||| |||||||||    
T  49360467 gaatactgctctttacacaacaaataattgctcgctcccaactgaaataccgaaattac 49360409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 53359305 - 53359260
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  53359305 gaattctgctttttacccaacaaaaattgctcgctcccaactgaaa 53359260  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 11422938 - 11422984
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 415  Q
    |||||||||||||||| ||||||||| |||||| || ||||||||||    
T  11422938 gaattctgctctttactcaacaaaaattgctcgttcccaactgaaat 11422984  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 44893489 - 44893535
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 415  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||    
T  44893489 gaattctgttctttacccaaccaaaattgctcgttctcaactgaaat 44893535  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 24398090 - 24398135
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  24398090 gaattatgctctttacccaacataaattgctcgctcccaactgaaa 24398135  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 2204 - 2249
Alignment:
Q  369 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 414  Q
    ||||||||||| |||||||||||||| ||||||||| ||| |||||    
T  2204 gaattctgctccttacccaacaaaaattgctcgctcccaattgaaa 2249  T

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