View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4696-Insertion-3 (Length: 505)

Name: NF4696-Insertion-3
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4696-Insertion-3
NF4696-Insertion-3
[»] chr8 (1 HSPs)
chr8 (227-505)||(25117993-25118271)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 227 - 505
Target Start/End: Complemental strand, 25118271 - 25117993
Alignment:
Q  227 ataatatactcttttgtggcaccaatcttcctagtcataagttttaatgacaataaactttttgataacaaaagaaatcttctaaatacatactactaca 326  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25118271 ataatatactcttttatggcaccaatcttcctagtcattggttttaatgacaataaacttttcgataacaaaagaaatcttctaaatacatactactaca 25118172  T
Q  327 aaataacttccttaagtatatggttaaaaacatgtttaataatctcaagcaggaagcaacacaaaagtataatgagaagatggcttggacactcaagtaa 426  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25118171 gaataacttccttaagtatatggttaaaaacatgtttaataatctcaagcaggaagcaacacaaaagtataatgagaagatggcttggacaatcaagtaa 25118072  T
Q  427 tagaagtcatcaagattgattaagagacacacaagcatgtatttgacgacccttcaaagctttaacaagtttggcattc 505  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25118071 tagaagtcatcaagattgattaagagacacagaagcatgtatttgacgacccttcaaagctttaacaagtttggcattc 25117993  T

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