View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4696-Insertion-4 (Length: 333)

Name: NF4696-Insertion-4
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4696-Insertion-4
NF4696-Insertion-4
[»] chr4 (3 HSPs)
chr4 (6-333)||(37742300-37742627)
chr4 (6-333)||(37749370-37749697)
chr4 (6-333)||(37752091-37752418)
[»] chr1 (1 HSPs)
chr1 (194-279)||(44635546-44635631)
[»] scaffold0119 (2 HSPs)
scaffold0119 (215-288)||(13475-13548)
scaffold0119 (215-288)||(19155-19228)
[»] chr2 (1 HSPs)
chr2 (215-288)||(1293046-1293119)
[»] chr6 (1 HSPs)
chr6 (236-320)||(12281633-12281717)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 37742627 - 37742300
Alignment:
Q  6 caaagctaaccacagcagcaacaactcccattctggttttgtgattctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaag 105  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742627 caaagctaaccacagcagcaacaacacccattctggttttgtgattctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaag 37742528  T
Q  106 tgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttattattattagcttctctttctctttttatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742527 tgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttattattattagcttctctttctctttttatc 37742428  T
Q  206 tgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagcgaaaccagctaggagca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37742427 tgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagctactaaaccagcgaaaccagctaggagca 37742328  T
Q  306 ttactttgatgtcttcttttatggctcc 333  Q
    |||||||||||||||||||||| |||||    
T  37742327 ttactttgatgtcttcttttatagctcc 37742300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 37749697 - 37749370
Alignment:
Q  6 caaagctaaccacagcagcaacaactcccattctggttttgtgattctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaag 105  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37749697 caaagctaaccacagcagcaacaacacccattctggttttgtgattctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaag 37749598  T
Q  106 tgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttattattattagcttctctttctctttttatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37749597 tgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttattattattagcttctctttctctttttatc 37749498  T
Q  206 tgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagcgaaaccagctaggagca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37749497 tgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagctactaaaccagcgaaaccagctaggagca 37749398  T
Q  306 ttactttgatgtcttcttttatggctcc 333  Q
    |||||||||||||||||||||| |||||    
T  37749397 ttactttgatgtcttcttttatagctcc 37749370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 6 - 333
Target Start/End: Original strand, 37752091 - 37752418
Alignment:
Q  6 caaagctaaccacagcagcaacaactcccattctggttttgtgattctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaag 105  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37752091 caaagctaaccacagcagcaacaacacccattctggttttgtgattctttataaatgcagctgctagcaatggcatcactgcaccaatagaaaatgcaag 37752190  T
Q  106 tgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttattattattagcttctctttctctttttatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37752191 tgctgatgctagggctgcttgaaatggatttggcaatttctccctttcactactttcatcatcattgttattattattagcttctctttctctttttatc 37752290  T
Q  206 tgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagcgaaaccagctaggagca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37752291 tgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcacctgctactaaaccagcgaaaccagctaggagca 37752390  T
Q  306 ttactttgatgtcttcttttatggctcc 333  Q
    |||||||||||||||||||||| |||||    
T  37752391 ttactttgatgtcttcttttatagctcc 37752418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 44635546 - 44635631
Alignment:
Q  194 tctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctac 279  Q
    ||||||||||  ||||| || |||||||||  ||| | ||||||||| ||||||||||| |||||||||||||| ||||| |||||    
T  44635546 tctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagctac 44635631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 13475 - 13548
Alignment:
Q  215 tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagc 288  Q
    ||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | ||||||    
T  13475 tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc 13548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 19155 - 19228
Alignment:
Q  215 tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagc 288  Q
    ||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | ||||||    
T  19155 tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc 19228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 1293119 - 1293046
Alignment:
Q  215 tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagc 288  Q
    ||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | ||||||    
T  1293119 tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc 1293046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 12281717 - 12281633
Alignment:
Q  236 acagaaacaaactcaccaattgccatgctacaagcaccggctactaaaccagcgaaaccagctaggagcattactttgatgtctt 320  Q
    ||||| ||||| ||||| ||||||||||| || ||||||||||| || || || ||||| | || || |||| ||||||||||||    
T  12281717 acagagacaaattcacctattgccatgctgcatgcaccggctaccaacccggcaaaaccggttaagatcattgctttgatgtctt 12281633  T

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