View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696-Insertion-6 (Length: 262)
Name: NF4696-Insertion-6
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696-Insertion-6 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 40566761 - 40567017
Alignment:
| Q |
6 |
cagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcagccgagagatctgg |
105 |
Q |
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| T |
40566761 |
cagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcagccgagagatctgg |
40566860 |
T |
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| Q |
106 |
ctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatatttcttctcccttgttatgatccatgtt |
205 |
Q |
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| T |
40566861 |
ctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatatatcttctcccttgttatgatccgtgtt |
40566960 |
T |
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| Q |
206 |
caccatgaggctcaagtttgacttgccaagtttggtccaaaccttcctaaactgtta |
262 |
Q |
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| T |
40566961 |
caccatgaggctcaagtttgacttgccaagtttggtccaaaccttcctaaactgtta |
40567017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 40600776 - 40600953
Alignment:
| Q |
6 |
cagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcagcc---gagagatc |
102 |
Q |
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| T |
40600776 |
cagtagggaaccaaacttgtcatcaagctcagaaggatctttccacttatgcgtgtaaggccgacaaaagtacatgttacgatgcaacaactgacagatc |
40600875 |
T |
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| Q |
103 |
tggctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatattt |
180 |
Q |
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| T |
40600876 |
tggttacctttgtagatgctctcatggatatcggggaaatccttatctcgttcatggttgccaaggtattatatattt |
40600953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 40577881 - 40578085
Alignment:
| Q |
7 |
agtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcag---ccgagagatct |
103 |
Q |
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| T |
40577881 |
agtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttacgaaacaggaaccaacaaatct |
40577980 |
T |
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| Q |
104 |
ggctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatata--tttcttctcccttgttatgatcca |
201 |
Q |
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| T |
40577981 |
ggttacctttgcagatgctctcatggatatcggggaaatccttacctcattaatggttgccaaggtattatatattttttttctcttttgttatgattca |
40578080 |
T |
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| Q |
202 |
tgttc |
206 |
Q |
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||||| |
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| T |
40578081 |
tgttc |
40578085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 40571456 - 40571632
Alignment:
| Q |
5 |
acagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcag---ccgagagat |
101 |
Q |
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| T |
40571456 |
acagtaggaaaccaaacatgcctgcaagctcagaagaatcttttcaattatgcatgtaaggccgagaaaagtacatgttacgatccaggaaccaacaaat |
40571555 |
T |
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| Q |
102 |
ctggctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatat |
178 |
Q |
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| T |
40571556 |
ctggttacctttgcagatgctttggtggatatcggggaaatccttacctcattaatggttgcgaaggtattatatat |
40571632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 40596144 - 40596222
Alignment:
| Q |
6 |
cagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgtta |
84 |
Q |
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| T |
40596144 |
cagtagggaaccaaacgtgccagcaagctcggaaggatctttccacttatgcatgtaaggcagacaaaagtaaatgtta |
40596222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 40589860 - 40589904
Alignment:
| Q |
126 |
atggatatcggggaaatccttacctcattcatggttgccaaggta |
170 |
Q |
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| T |
40589860 |
atggatataggggaaatccttacctcattcatggttgcgaaggta |
40589904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 2016913 - 2016736
Alignment:
| Q |
6 |
cagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcagccgagagatctgg |
105 |
Q |
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| T |
2016913 |
cagtagggaaccaaacgtgccagcaagctcagaaggatcttgcaaattatgcctgtaaggacaacaaaagtacatgttacaatccacctgagaaatctgg |
2016814 |
T |
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| Q |
106 |
ctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatatttctt |
183 |
Q |
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| T |
2016813 |
ttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatatttctt |
2016736 |
T |
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