View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696-Insertion-7 (Length: 178)
Name: NF4696-Insertion-7
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696-Insertion-7 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 31514675 - 31514505
Alignment:
| Q |
8 |
actggtggcatcaaataaaccaccagaaaatacactccaatgtacgcatgcacatgcatcaacgcatggagtcttgtacattctgacttctctctatgtt |
107 |
Q |
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| T |
31514675 |
actggtggcatcaaataaaccaccacaaaatacactccaatgtacgcatgcacatgcatcaacgcatggagtcttgtacattctgacttctctctatgtt |
31514576 |
T |
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| Q |
108 |
cacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatcattgttccac |
178 |
Q |
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| T |
31514575 |
cacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatcattgttccac |
31514505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 31473515 - 31473406
Alignment:
| Q |
69 |
acgcatggagtcttgtacattctgacttctctctatgttcacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatc |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31473515 |
acgcatggagtcttgtacattctgacttctctctatgttcacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatc |
31473416 |
T |
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| Q |
169 |
attgttccac |
178 |
Q |
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| T |
31473415 |
attgttccac |
31473406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 31494719 - 31494610
Alignment:
| Q |
69 |
acgcatggagtcttgtacattctgacttctctctatgttcacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatc |
168 |
Q |
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| T |
31494719 |
acgcatggagtcttgtacattctgacttctctctatgttcacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatc |
31494620 |
T |
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| Q |
169 |
attgttccac |
178 |
Q |
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| T |
31494619 |
attgttccac |
31494610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 31500105 - 31499996
Alignment:
| Q |
69 |
acgcatggagtcttgtacattctgacttctctctatgttcacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatc |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31500105 |
acgcatggagtcttgtacattctgacttctctctatgttcacgcggtcccctctcctaaatgcaccattggttcatataattccttgacacttctttatc |
31500006 |
T |
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| Q |
169 |
attgttccac |
178 |
Q |
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|||||||||| |
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| T |
31500005 |
attgttccac |
31499996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31494762 - 31494713
Alignment:
| Q |
8 |
actggtggcatcaaataaaccaccagaaaatacactccaatgtacgcatg |
57 |
Q |
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| T |
31494762 |
actggtggcatcaaataaaccaccacaaaatacactccaatgtacgcatg |
31494713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31500148 - 31500099
Alignment:
| Q |
8 |
actggtggcatcaaataaaccaccagaaaatacactccaatgtacgcatg |
57 |
Q |
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| T |
31500148 |
actggtggcatcaaataaaccaccacaaaatacactccaatgtacgcatg |
31500099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 31473554 - 31473509
Alignment:
| Q |
12 |
gtggcatcaaataaaccaccagaaaatacactccaatgtacgcatg |
57 |
Q |
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| T |
31473554 |
gtggcatcaaataaaccaccacaaaatacactccaatgtacgcatg |
31473509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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