View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_high_15 (Length: 240)
Name: NF4696_high_15
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44133832 - 44134053
Alignment:
| Q |
1 |
ccaccaaaataacttttgagtggtgttgctttgattctaacgtggagaaagaaataaaatcgcaatgtactcgttttgtagttgtgctattttatattgt |
100 |
Q |
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| T |
44133832 |
ccaccaaaataacttttgagtggtgttgctt-gattctaacgtggagaaagaaataaaatcgtaatgtattcgttttgtagttgtgctattttatattgt |
44133930 |
T |
|
| Q |
101 |
tattctgatggcctcattaatcactacaaacaacttgaatgggcaacaacctaatggaatggccaacaacctaataaacaatgttcagattcttttacgt |
200 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44133931 |
tattctgatggcctcactagtcactacaaacaacttgaatgggcaacaacctaatggaatggccaacaacctaataaacaatgttcagattcttttacgt |
44134030 |
T |
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| Q |
201 |
cacactatttcaattgatgggtg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44134031 |
cacactatttcaattgatgggtg |
44134053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 50050891 - 50051108
Alignment:
| Q |
1 |
ccaccaaaataacttttgagtggtgttgctttgattctaacgtggagaaagaaataaaatcgcaatgtactcgttttgtagttgtgctattttatattgt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50050891 |
ccaccaaaataacttttgagtggtgttgctt-gattctaacgtggagaaagaaataaaatcgcaatgtactcgttttgtagttgtgctattttatattgt |
50050989 |
T |
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| Q |
101 |
tattctgatggcctcattaatcactacaaacaacttgaatgggcaacaacctaatggaatggccaacaacctaataaacaatgttcagattcttttacgt |
200 |
Q |
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|||||||||||||||| || |||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| || |||||||||||| |
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| T |
50050990 |
tattctgatggcctcactagtcaccacaaacaacttgaatggtcaacaacctaat-gaatgggcaacaacctaataaacaatgctcgaattcttttacgt |
50051088 |
T |
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| Q |
201 |
cacactatttcaattgatgg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
50051089 |
cacactatttcaattgatgg |
50051108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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