View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_10 (Length: 294)
Name: NF4696_low_10
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 84 - 291
Target Start/End: Original strand, 44133575 - 44133782
Alignment:
| Q |
84 |
gctgaactttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatgcacagtgtccactttgattttgcggctagtgc |
183 |
Q |
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| T |
44133575 |
gctgaaatttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatgcacagtgtccactttgattttgcggctagtgc |
44133674 |
T |
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| Q |
184 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgttcattataattggtgcacaaagcatatatagtacattcttataaaattaagataaccct |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44133675 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgtttattataattggtgcacaaaacatatatagtacattcttataaaattaagataaccct |
44133774 |
T |
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| Q |
284 |
tgtccctt |
291 |
Q |
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||| |||| |
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| T |
44133775 |
tgttcctt |
44133782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44133492 - 44133524
Alignment:
| Q |
1 |
gacgttcctttttccaattaaataacgataatg |
33 |
Q |
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| T |
44133492 |
gacgttcctttttccaattaaataacgataatg |
44133524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 50050442 - 50050634
Alignment:
| Q |
84 |
gctgaactttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatgcacagtgtccactttgattttgcggctagtgc |
183 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50050442 |
gctgaaatttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatttacagtgtccactttgattttgcggctagtgc |
50050541 |
T |
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| Q |
184 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgttcattataattggtgcacaaagcatatatagtacattcttataaaattaaga |
276 |
Q |
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| T |
50050542 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgttcattataattggtgcacaaaacatatatagtacattcttataaaattaaga |
50050634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50050364 - 50050396
Alignment:
| Q |
1 |
gacgttcctttttccaattaaataacgataatg |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
50050364 |
gacgttcctttttccaattaaataacgataatg |
50050396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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