View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_11 (Length: 252)
Name: NF4696_low_11
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 42658412 - 42658178
Alignment:
| Q |
13 |
aaggtaattgccgttgggcgtgaggagtcaggggataataatcatgtcgaggagtgattataagatcaaacctattcaggaggaaccttggatgttgtat |
112 |
Q |
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| T |
42658412 |
aaggtaattgccgttgggcgtgaggagtcaggggataataatcatgtcgaggagtgattataagatcaaacctattcaggaggaaccttggatgttgtat |
42658313 |
T |
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| Q |
113 |
ctgaattgagtgtgtaataagagagttagacagctacaaatataatataatgtattgtatcgtatgtcactatgccatcattcattatacattatccatg |
212 |
Q |
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| T |
42658312 |
ctgaattgagtgtgtaataagagagttagacagctacaaata-----taatgtattgtatcgtatgtcactatgccatcattcattatacattatccatg |
42658218 |
T |
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| Q |
213 |
catatatggaacagaaaagaataaattaaaaaagatgcac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42658217 |
catatatggaacagaaaagaataaattaaaaaagatgcac |
42658178 |
T |
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