View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_13 (Length: 250)
Name: NF4696_low_13
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 10198784 - 10199023
Alignment:
| Q |
10 |
ataattctgcagggcaacatgcaaactctcagaacaccttttcatctcgcttctgaaaacggcaagtggagggagcttatcctcgatctcgctaatctct |
109 |
Q |
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| T |
10198784 |
ataattctgcagggcaacatgcaaactctcagaacaccttttcatctcgcttctgaaaacggcaagtggagggagcttatcctcgatctcgctaatctct |
10198883 |
T |
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| Q |
110 |
ccgtcatgaaaggggttcataattgaggaccttccggtaagaacatcgtccctgcctttgttcacaagggacaccatgcatccaagaacagaaactattt |
209 |
Q |
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| T |
10198884 |
ccgtcatgaaaggggtttataattgaggaccttccggtaagaacatcgtccctgcctttgttcacaagggataccatgcatccaagaacagaaactattt |
10198983 |
T |
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| Q |
210 |
tatcttcaagttgaggtttctcatctgatgaaacctcata |
249 |
Q |
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| T |
10198984 |
tatcttcaagttgaggtttctcatctgatgaaacctcata |
10199023 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 40304896 - 40304957
Alignment:
| Q |
23 |
gcaacatgcaaactctcagaacaccttttcatctcgcttctgaaaacggcaagtggagggag |
84 |
Q |
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| T |
40304896 |
gcaacatgcaagctctcacaacaccttttcatctcgcctctgaaaatagcgagtggagggag |
40304957 |
T |
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