View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_2 (Length: 490)
Name: NF4696_low_2
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 40320102 - 40319802
Alignment:
| Q |
7 |
gtgagatgaaagctagatatgcaaaaagtccactttacatatccaaattttaaaatacgaaagtataaaacttcatttttcagttaaaagaagttcgtaa |
106 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
40320102 |
gtgaaatgaaagctagatatgtaaaaagtccactttacatatccaaattttaaaatacgaaagcataaaacttcatttt-cagttaaaagaagttcgtaa |
40320004 |
T |
|
| Q |
107 |
tgtttccttacataccaagaatcggtgctattaatctgacctttgttattatcaatctagcatgtataatcattggttggaagagtatgttttgagcacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40320003 |
tgtttccttacataccaagaatcggtgctattaatctgacctttgttattgtcaatctagcatgtataatcattggttggaagagtatg-tttgagcacc |
40319905 |
T |
|
| Q |
207 |
gaaaaaattaaaccaactaccagagccgtgtacactgaaaaaattgcttccaaacattgttagttcatctaattgattttacacttatgagtcggttata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
40319904 |
gaaaaaattaaaccaactaccagagccgtgtacactgaaaaaattgcttccaaacattgttagtccatctaattgattttacacttatgagccggttata |
40319805 |
T |
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| Q |
307 |
gat |
309 |
Q |
| |
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||| |
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| T |
40319804 |
gat |
40319802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 45297917 - 45298210
Alignment:
| Q |
7 |
gtgagatgaaagctagatatgcaaaaagtccactttacatatccaaattttaaaatacgaaagtataaaacttcatttttcagttaaaagaagttcgtaa |
106 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45297917 |
gtgaaatgaaagctagatatgtaaaaagtccactttacatatccaaattttaaaatatgaaagtataaaacttcatttttcagttaaaagaagttcgtaa |
45298016 |
T |
|
| Q |
107 |
tgtttccttacataccaagaatcggtgctattaatctgacctttgttattatcaatctagcatgtataatcattggttggaagagtatgttttgagcacc |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45298017 |
tgtttccttacataccaagaatcggtgctattaatgtgacctttgttattgtcaatctagcatgtataatcattggttggaagagtatg-tttgagcacc |
45298115 |
T |
|
| Q |
207 |
gaaaaaattaaaccaactaccagagccgtgtacactgaaaaaattgcttccaaacattgttagttcatctaattgattttacacttatgagtcggttata |
306 |
Q |
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||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45298116 |
gaaaaaattaaaccaactaccag--------acaccggaaaaattgcttccaaacattcttagttcatctaattgaatttacacttatgagccggttata |
45298207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 93 - 309
Target Start/End: Complemental strand, 54829411 - 54829196
Alignment:
| Q |
93 |
aaagaagttcgtaatgtttccttacataccaagaatcggtgctattaatctgacctttgttattatcaatctagcatgtataatcattggttggaagagt |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
54829411 |
aaagaagttcgtaatgtttccttacataccaagaatcggtgctattaatgtgacctttgttattgtcaacctagcatgtataatcattggttggaagagc |
54829312 |
T |
|
| Q |
193 |
atgttttgagcaccgaaaaaattaaaccaactaccagagccgtgtacactgaaaaaattgcttccaaacattgttagttcatctaattgattttacactt |
292 |
Q |
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||| |||||||| |||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||| |||| |
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| T |
54829311 |
atg-tttgagcatcgaaaaaattaaaccaactaacagagccatgtacacttgaaaaattgtttccaaacattcttagtccatctaattgattttagactt |
54829213 |
T |
|
| Q |
293 |
atgagtcggttatagat |
309 |
Q |
| |
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||||| ||||||||||| |
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| T |
54829212 |
atgagccggttatagat |
54829196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 35186706 - 35186774
Alignment:
| Q |
221 |
aactaccagagccgtgtacactgaaaaaattgcttccaaacattgttagttcatctaattgattttaca |
289 |
Q |
| |
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||||||||||| | ||||||||| |||||||||||| | | ||| |||| |||| ||||||||||||| |
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| T |
35186706 |
aactaccagagacttgtacactggaaaaattgcttctagatattattagcccatccaattgattttaca |
35186774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 32913987 - 32913917
Alignment:
| Q |
29 |
aaaaagtccactttacatatccaaattttaaaatacgaaagtataaaacttcatttttcagttaaaagaagtt |
101 |
Q |
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||||| ||||||||||| ||||||||||||||| | || |||||||| ||||||||||| |||| ||||||| |
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| T |
32913987 |
aaaaattccactttacacatccaaattttaaaa-ccaaacgtataaaa-ttcatttttcaattaagagaagtt |
32913917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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