View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4696_low_4 (Length: 369)

Name: NF4696_low_4
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4696_low_4
NF4696_low_4
[»] chr1 (1 HSPs)
chr1 (17-369)||(46916077-46916435)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 46916435 - 46916077
Alignment:
Q  17 acctttaatatataattaaaactactttagcatacagaacgataagagtgtctattcttttgctatagttgttgaagctctctctttggatactcttggt 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46916435 acctttaatctataattaaaactactttagcatacagaacgataagagtgtctattcttttgctatagttgttgaagctctctctttggatactcttggt 46916336  T
Q  117 ttgtccccaaagcttccctacataatacattaaataaatagcaattattaagcagtgtgtaaaccataaatatctattttaatgtcatcctttttatgcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46916335 ttgtccccaaagcttccctacataatacattaaataaatagcaattattaagcagtgtgtaaaccataaatatctattttaatgtcatcccttttatgcc 46916236  T
Q  217 cagcgcaaattttgagttcttcaaccttagttcttggcttggcc-----atggaccaactgggaatttcggaccttacaaagcattggctattggatc-t 310  Q
    ||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||||||||| |||||||||||||||||||| |||||||| |    
T  46916235 cagcgcaaattttgagttcttcaactttagttcttggcttggccattttatggaccaactgggaattttggaccttacaaagcattggccattggatcat 46916136  T
Q  311 tcagatttctttcttttggagctttgactcatctattcaaatgcttatctaagaataat 369  Q
    | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46916135 ttagatttgtttcttttggagctttgactcatctattcaaatacttatctaagaataat 46916077  T

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