View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_5 (Length: 331)
Name: NF4696_low_5
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 33076513 - 33076820
Alignment:
| Q |
6 |
cacagaacctcaaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaaca |
105 |
Q |
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| T |
33076513 |
cacagaacctgaaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaaca |
33076612 |
T |
|
| Q |
106 |
ttattatataactcaatcactatggtttctgtcatgcttgtcggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtttggcg |
205 |
Q |
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||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33076613 |
ttattatataactcaatcactttggtttctgtcatgcttattggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtttggcg |
33076712 |
T |
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| Q |
206 |
tcactgccgtgggagttatggtaatttactattttttgcatccgatctcaaatataagcaattgttcaaagaaagttatca--tgtatcttaggtcaagt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
33076713 |
tcactgccgtgggagttatggtaatttactattttttgcatccgatctcaaatataagcaattgttcaaagaaagttatcaagtatatcttaggtcaagt |
33076812 |
T |
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| Q |
304 |
acatcaac |
311 |
Q |
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|||||||| |
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| T |
33076813 |
acatcaac |
33076820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 33068170 - 33068463
Alignment:
| Q |
6 |
cacagaacctcaaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaaca |
105 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33068170 |
cacagaacctgaaatggagaagaaatggtggaacaaaatcttggacattaaggaagccaaacatcaactcatgtttgcactgccaataattcttacaaca |
33068269 |
T |
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| Q |
106 |
ttattatataactcaatcactatggtttctgtcatgcttgtcggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtttggcg |
205 |
Q |
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|||||||| ||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
33068270 |
atattatattactcaattactttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagccggtgctactcttgctaactcgtggtttggtg |
33068369 |
T |
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| Q |
206 |
tcactgccgtgggagttatggtaatttactattttttgcatccgatctcaaatataagcaa-ttgttcaaagaaagttatcatgtatcttaggt |
298 |
Q |
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| T |
33068370 |
tcactgccgtcggggttatggtaatttactatttttaacatccggtctcggatataagcaatttgttcaaagaaagttatcatgtatcttaggt |
33068463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 33086195 - 33086389
Alignment:
| Q |
6 |
cacagaacctcaaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaaca |
105 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||| | ||||| ||| |||||| |
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| T |
33086195 |
cacagaacctgaaatggagaagaaatggtggaataaaatcttggacattgaggaagcaaaacatcaactcatgttttcattaccaatgatttttacaaat |
33086294 |
T |
|
| Q |
106 |
ttattatataactcaatcactatggtttctgtcatgcttgtcggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtt |
200 |
Q |
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| T |
33086295 |
ttattttattacttgatcactttggtttctgtcatgcttgttggtcatcttggtgaccttcagttagcaggtgctactcttgccaactcatggtt |
33086389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 33060067 - 33060272
Alignment:
| Q |
26 |
agaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaacattattatataactcaatcac |
125 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | ||||| ||| |||||| ||||| ||| ||| ||||| |
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| T |
33060067 |
agaaatggtggaacaaaatcttggacatagaggaagccaaaattcaactcatgttttcattaccaatgatttttacaaacttattttattacttgatcac |
33060166 |
T |
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| Q |
126 |
tatggtttctgtcatgcttgtcggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtttggcgtcactgccgtgggagttatg |
225 |
Q |
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| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| | ||||||| ||| | ||||||| |
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| T |
33060167 |
tttggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgtcactggcgtagcagttatg |
33060266 |
T |
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| Q |
226 |
gtaatt |
231 |
Q |
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|||||| |
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| T |
33060267 |
gtaatt |
33060272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 33046620 - 33046834
Alignment:
| Q |
17 |
aaatggagaagaaatggtggaacaaaatcttggacattaaggaaaccaaacatcaactcatgttttcactgccaataattcttacaacattattatataa |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | ||||| ||| |||||| ||||| ||| | |
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| T |
33046620 |
aaatggagaataaatggtggaacaaaatcttggacatagaggaagccaaaattcaactcatgttttcattaccaatgatttttacaaacttattttatta |
33046719 |
T |
|
| Q |
117 |
ctcaatcactatggtttctgtcatgcttgtcggtcatctgggtgagcttcagttagctggtgctactcttgctaactcgtggtttggcgtcactgccgtg |
216 |
Q |
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|| || || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| | ||||||| ||| |
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| T |
33046720 |
cttgattacattggtttctgtcatgcttgttggtcatcttggtgagcttcagttagctggtgctactcttgctaattcttggtttagtgtcactggcgta |
33046819 |
T |
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| Q |
217 |
ggagttatggtaatt |
231 |
Q |
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| T |
33046820 |
gcagttatggtaatt |
33046834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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