View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_8 (Length: 298)
Name: NF4696_low_8
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 31655341 - 31655062
Alignment:
| Q |
1 |
aagaggtgcacgaccttttattcaacttggtacttccaacttgcaaatttaaaatttgtacccattttggagtatttagacaaaagttcatcgatcagtt |
100 |
Q |
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| T |
31655341 |
aagaggtgcacgaccttttattcaacttggtacttcctacttgcaaatttaaaatttgatcccattt-ggagtatttagacaaaagttcatcgatcagtt |
31655243 |
T |
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| Q |
101 |
tcatttcacacaggccaaaggggtgcgtgaagggcacacaagatatgtaatttcgatgtaacataagtacgtgtagtaagaaatttctcaagatatatac |
200 |
Q |
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| T |
31655242 |
tcatttcacacaggccaaaggagtgcgtgaagagcacacaagatatgtaatttcgatgtaacataagtacgtgtagtaagaaatttctcaagatatatac |
31655143 |
T |
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| Q |
201 |
ttttcccatcacaagtactataattaattaaaattcaaataagtttcattaatttaaatagaatccacataaattttcaagg |
282 |
Q |
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| T |
31655142 |
tttt-ccatcacaagtactataattaattaaaattcaaataagtttcattaatttaaatagaatccacatatatttttaagg |
31655062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 31648309 - 31648131
Alignment:
| Q |
14 |
ccttttattcaacttggta--cttccaacttgcaaatttaaaatttgtacccattttggagtatttagacaaaagttcatcgatcagtttcatttcacac |
111 |
Q |
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| T |
31648309 |
ccttttattcaacttgttaaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatagacaaaagttcctag-tcaggttcatttcacac |
31648211 |
T |
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| Q |
112 |
aggccaaaggggtgcgtgaagggcacacaagatatgtaatttcgatgtaacataagtacgtg-tagtaagaaatttctcaa |
191 |
Q |
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| T |
31648210 |
agaccaaa-acgtgtgtgaagaacacacaacatacgaaatttcaatgtgaattaactacgtgttagtaagaaatttatcaa |
31648131 |
T |
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