View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4696_low_9 (Length: 298)
Name: NF4696_low_9
Description: NF4696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4696_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 31127122 - 31126836
Alignment:
| Q |
1 |
tggaatcgctgcatttaacctctcactgctgattcgtgagctatcatcaaatgcttttacaaaagctgtttcgggaagagaagggaggagatactccgga |
100 |
Q |
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| T |
31127122 |
tggaatcgctgcatttaacctctcactgctgattcgtgagctatcatcaaaggctttaacaaacgctgtttcgggaagagaagggaggagatactccgga |
31127023 |
T |
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| Q |
101 |
tcgaatccaaaagcaattatgcaaatattatcaaatgtaaaacgttggagaatatcttggaaattagggagaatacttttgttatcggaagcttcatgga |
200 |
Q |
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| T |
31127022 |
tcaaatccaaacgcaattatgcaaatattatcaaacgtgaaacgttggagaatatcttgaaaattagcgagaattgttttgttttccgaaacttcagaga |
31126923 |
T |
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| Q |
201 |
gaataggaagcagacgatccttgagttcaacgtcgacgacagtttcaacgaatttgcggagggatttagtgttgaattcatggctgg |
287 |
Q |
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| T |
31126922 |
gaattggaagaaggcgatcgttgagttcaacatcgacaacagtttcaacgaattttcggagggatttagtgttgaattcatggctgg |
31126836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 31131803 - 31131533
Alignment:
| Q |
28 |
gctgattcgtgagctatcatcaaatgcttttacaaaagctgtttcgggaagagaagggaggagatactccggatcgaatccaaaagcaattatgcaaata |
127 |
Q |
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| T |
31131803 |
gctgattcgtgtgctatcgtcaaaagctttgacaaacgcgatttcgggaagagaagggatgagatattccggatcgaatccaaatgtgattatgcaaata |
31131704 |
T |
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| Q |
128 |
ttatcaaatgtaaaacgttggagaatatcttggaaattagggagaatacttttgttatcggaagcttcatggagaataggaagcagacgatccttgagtt |
227 |
Q |
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| T |
31131703 |
ttatcaaacgtaaaacgttggagaatatcttgaaaatcagggaggatcatttagtttttggaggcttcatggagaataggaaggagacggtcgttaagtt |
31131604 |
T |
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| Q |
228 |
caacgtcgacgacagtttcaacgaatttgcggagggatttagtgttgaattcatggctggggatttgtcgt |
298 |
Q |
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| T |
31131603 |
caacatccaccaccgtttcgatgaatttgcatggggatttagtgttgaattcatggctggagatttgtcgt |
31131533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 31077804 - 31077507
Alignment:
| Q |
1 |
tggaatcgctgcatttaacctctcactgctgattcgtgagctatcatcaaatgcttttacaaaagctgtttcgggaagagaagggaggagatactccgga |
100 |
Q |
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||||||||| || || || ||| ||||||| ||| |||||||||| ||||| ||||||||||| |||| ||||||||||| | | ||||||||| |
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| T |
31077804 |
tggaatcgcagcgttaaatctcacactgctaattagtgagctatcgtcaaaggcttttacaaacatggttttgggaagagaagaatgtaagtactccgga |
31077705 |
T |
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| Q |
101 |
tcgaatccaaaagcaattatgcaaatattatcaaatgtaaaacgttggagaatatcttggaaattagggagaatacttttgttatcggaagcttcatgga |
200 |
Q |
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| T |
31077704 |
tcgaatccaaacgcgattctgcagatactatcgaacgtaaaacgttggaggatatcttgaaaatcaagcagaaccgtttggtttttggaagcttcggaga |
31077605 |
T |
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| Q |
201 |
gaataggaagcagacgatccttgagttcaacgtcgacgacagtttcaacgaatttgcggagggatttagtgttgaattcatggctggggatttgtcgt |
298 |
Q |
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| T |
31077604 |
gaataggaagcagacgatcattgagttcaacctcgacgacagtttcgacaaatttacgtagagacttagtgttgaattcatggctggaaatttgtcgt |
31077507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 38655151 - 38655085
Alignment:
| Q |
98 |
ggatcgaatccaaaagcaattatgcaaatattatcaaatgtaaaacgttggagaatatcttggaaat |
164 |
Q |
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| T |
38655151 |
ggatcgaaaccaaacgcgattttgcagatattgtcaaacgtgaaacgttggagaatgtcttggaaat |
38655085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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