View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4697-Insertion-1 (Length: 1010)

Name: NF4697-Insertion-1
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4697-Insertion-1
NF4697-Insertion-1
[»] scaffold0831 (2 HSPs)
scaffold0831 (10-428)||(4780-5198)
scaffold0831 (426-618)||(5261-5451)
[»] chr1 (4 HSPs)
chr1 (530-579)||(17392134-17392183)
chr1 (808-853)||(19219192-19219237)
chr1 (808-853)||(19225449-19225494)
chr1 (342-375)||(17417770-17417803)
[»] chr8 (4 HSPs)
chr8 (811-867)||(13472934-13472990)
chr8 (808-861)||(27183901-27183954)
chr8 (808-853)||(27230297-27230342)
chr8 (811-862)||(12652276-12652327)
[»] chr2 (2 HSPs)
chr2 (808-867)||(13281083-13281142)
chr2 (813-862)||(7428992-7429041)
[»] chr5 (1 HSPs)
chr5 (821-863)||(42564990-42565032)
[»] chr3 (1 HSPs)
chr3 (811-853)||(2703738-2703780)


Alignment Details
Target: scaffold0831 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 4780 - 5198
Alignment:
Q  10 gatttcacaaatcaatgcgcggcttagtggtagaatgtcctgtaactatggtcattttgctgtagtgcnnnnnnngttttatcagatcatcatatcaaca 109  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||       ||||||||||||||||| |||||||    
T  4780 gatttcacaaatcaatgcgcggcttagtggtagaatatcctttaactatggtcattttgctgtagtgctttttttgttttatcagatcatcacatcaaca 4879  T
Q  110 aaataatctataccaggccagttcttcataatattaccatgtgaattaagaactgtgtatccattgatgtagtagcattttatcttgctagagacaaagt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4880 aaataatctataccaggccagttcttcataatattaccatgtgaatcaagaactgtgtatccattgatgtagtggcattttatcttgctagagacaaagt 4979  T
Q  210 tacgagttcatgatcattcacaagtgcaatgcaacaggaaaatagagaagacgtaatgtactactactgattggaacatatatctcagaaaacatctttt 309  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4980 tacgagttcatgatcattcacaagtgcaatgcaaaaggaaaatagagaagacgtaatgtactactactgattggaacatatatatcagaaaacatctttt 5079  T
Q  310 caatgactattttggttgtacagatgtataaacaaccatttatgtttcaacagtataaacaaatcatatcaaaaacaaatcacacttttgcatcaaatat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5080 caatgactattttggttgtacagatgtataaacaaccatttatgtttcaacagtataaacaaatcatatcaaaaacaaatcacacttctgcatcaaatat 5179  T
Q  410 tcagtcttaatcgaaacaa 428  Q
    |||||||||||| ||||||    
T  5180 tcagtcttaatcaaaacaa 5198  T

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Target: scaffold0831; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 426 - 618
Target Start/End: Original strand, 5261 - 5451
Alignment:
Q  426 caatgtttcctgaaatatctggtacacggaagagctcgtccgtaaaaggagaactaattaaatatcaatccaatatgtcatagaaagataataagcatta 525  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||||||||||| ||||||||||||||||||||||||||    
T  5261 caatgtttcctgaaatatatggtacagggaagagctcgtccgtaaaaggagaactaa----atatcaatccaacatgtcatagaaagataataagcatta 5356  T
Q  526 aaataaaaccagggaaaccaaacaagtactacttcctattgtttaataaaact---tgctttggctacaaaaaccaattaattgtctacttctcca 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||| |||||||||||||||||||||||||||    
T  5357 aaataaaaccagggaaaccaaacaagtactacttcctattgtttaataaaactttatgctttgactac-aaaaccaattaattgtctacttctcca 5451  T

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Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 17392183 - 17392134
Alignment:
Q  530 aaaaccagggaaaccaaacaagtactacttcctattgtttaataaaactt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17392183 aaaaccagggaaaccaaacaagtactacttcctattgtttaataaaactt 17392134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 808 - 853
Target Start/End: Original strand, 19219192 - 19219237
Alignment:
Q  808 tcgaagagtttagtccatgattccttgacaccgatttcacccaaaa 853  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  19219192 tcgaagagcttagtccatgattccttgacaccgagttcacccaaaa 19219237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 808 - 853
Target Start/End: Original strand, 19225449 - 19225494
Alignment:
Q  808 tcgaagagtttagtccatgattccttgacaccgatttcacccaaaa 853  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||    
T  19225449 tcgaagagcttagtccatgattccttgacaccgagctcacccaaaa 19225494  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 17417770 - 17417803
Alignment:
Q  342 caaccatttatgtttcaacagtataaacaaatca 375  Q
    |||||||||||||||||||| |||||||||||||    
T  17417770 caaccatttatgtttcaacaatataaacaaatca 17417803  T

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Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 867
Target Start/End: Original strand, 13472934 - 13472990
Alignment:
Q  811 aagagtttagtccatgattccttgacaccgatttcacccaaaaccgatatgttgaaa 867  Q
    |||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  13472934 aagagtctagtccatgattctttgacaccgatttcacccaaaattgatatgttgaaa 13472990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 808 - 861
Target Start/End: Complemental strand, 27183954 - 27183901
Alignment:
Q  808 tcgaagagtttagtccatgattccttgacaccgatttcacccaaaaccgatatg 861  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  27183954 tcgaagagtttaatccatgattctttgacaccaatttcacccaaaatcgatatg 27183901  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 808 - 853
Target Start/End: Original strand, 27230297 - 27230342
Alignment:
Q  808 tcgaagagtttagtccatgattccttgacaccgatttcacccaaaa 853  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||    
T  27230297 tcgaagagtctagtccatgattccttgacaccaatctcacccaaaa 27230342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 862
Target Start/End: Complemental strand, 12652327 - 12652276
Alignment:
Q  811 aagagtttagtccatgattccttgacaccgatttcacccaaaaccgatatgt 862  Q
    |||||||||||||| |||||||  ||||| ||||||||||||| ||||||||    
T  12652327 aagagtttagtccacgattcctcaacaccaatttcacccaaaatcgatatgt 12652276  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 867
Target Start/End: Complemental strand, 13281142 - 13281083
Alignment:
Q  808 tcgaagagtttagtccatgattccttgacaccgatttcacccaaaaccgatatgttgaaa 867  Q
    ||||||||| ||||||||||||| || ||||| |||||||||||||  |||||| |||||    
T  13281142 tcgaagagtctagtccatgattctttaacaccaatttcacccaaaattgatatgctgaaa 13281083  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 813 - 862
Target Start/End: Original strand, 7428992 - 7429041
Alignment:
Q  813 gagtttagtccatgattccttgacaccgatttcacccaaaaccgatatgt 862  Q
    |||||||||||||||| |  | |||||||||||||||||||| |||||||    
T  7428992 gagtttagtccatgatcctctcacaccgatttcacccaaaactgatatgt 7429041  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 821 - 863
Target Start/End: Original strand, 42564990 - 42565032
Alignment:
Q  821 tccatgattccttgacaccgatttcacccaaaaccgatatgtt 863  Q
    ||||||||||||||||||| | |||||||||||| ||||||||    
T  42564990 tccatgattccttgacacctagttcacccaaaactgatatgtt 42565032  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 811 - 853
Target Start/End: Complemental strand, 2703780 - 2703738
Alignment:
Q  811 aagagtttagtccatgattccttgacaccgatttcacccaaaa 853  Q
    ||||||||| ||||||||||||||||||| | |||||||||||    
T  2703780 aagagtttaatccatgattccttgacaccaagttcacccaaaa 2703738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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