View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4697-Insertion-2 (Length: 900)
Name: NF4697-Insertion-2
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4697-Insertion-2 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 22 - 900
Target Start/End: Original strand, 13865377 - 13866254
Alignment:
| Q |
22 |
gatataggaaaatgcacagttcatcttgttccgttcactttgcaaatcacaaattggaaactctactccatcgtataattgtagaatatgtacgcagatt |
121 |
Q |
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| T |
13865377 |
gatataggaaaatgcacagttcatcttgttccgttcactttgcaaatcacaaattggaaactctactccatcgtataattgtagaatatgtacgcagatt |
13865476 |
T |
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| Q |
122 |
atggtagtgcaggtgcaataaggttgtcaacaagttcttgaagttgatcctgtcaagagagccagaagnnnnnnnnn-ttaacaccatgcatttaaatgt |
220 |
Q |
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| T |
13865477 |
atggtagtgcaggtgcaatgaggttgtcaacaagttcttgaagttgatcctgtcaagagagccagaagaagaagaaaattaacaccatgcatttaaatgt |
13865576 |
T |
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| Q |
221 |
aaatttaatttatatttactgtctgtgtaaatatgttttacactaacattcggatcattgaaaatatttgacttttattgtaacttcttttaaagtcgca |
320 |
Q |
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| T |
13865577 |
aaatttaatttatatttactgtgtgtgtaaatatgttttacactaacattcggatcattgaaaatatttgacttttattgtaacttcttttaaagtcgca |
13865676 |
T |
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| Q |
321 |
tattgattggttgtgattcgttgagagtataataactttttatggtagtgtgtacaacctccaatctcatatatacgtaaagannnnnnnn--catattt |
418 |
Q |
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| T |
13865677 |
tattgattggttgtgatttattgagagtataataactttttatggtagtgtgtacaacctccaatctcatatatacgtaaagattttttttttcatattt |
13865776 |
T |
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| Q |
419 |
gccgaataattaatgtattgactttataatatatatcaaatacaatagttattcaatgaatcagaagaagnnnnnnnncatagtgaagaaaagtgtttgt |
518 |
Q |
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| T |
13865777 |
accgaataattaatgtattgactttataatatagatcaaatacaatagttattcaatgaatcagaagaagaaaaaaaacatagtgaagaaaagtgtttgt |
13865876 |
T |
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| Q |
519 |
ttacagctttctaaactcaaagataacacaccaatactaaaatatacatggaacatttaggttttgtttgaaagttaagagggattggaagaaacagaag |
618 |
Q |
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| T |
13865877 |
ttacagctttctaaactcaaagataacacaccaagactaaaatatacatggaacatttaggttttgtttgaaagttaagagggattggaagaaacagaag |
13865976 |
T |
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| Q |
619 |
cggacgaaatggaggggaaggtagcatacctaactcccaaacttgcatggaggttgannnnnnnacctaggattaaaaaacctccctaatttgatggaac |
718 |
Q |
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| T |
13865977 |
cgaacgaaatggagaggaaggtagcatacctaactcccaaacttgcatggaggttgatttttctacctaggattaaaaaacctccctaatttgatggaac |
13866076 |
T |
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| Q |
719 |
tcaataaattggaagaagacttggttttggttttggagggcttcaaaaaattgtttaaattctttcggttttttaggtaaaagactaatgtaatattagg |
818 |
Q |
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| T |
13866077 |
tcaataaattggaagaagacttggttttggttttggagggcttcaaaaaattgtttaaattctttcggttttttaggtaaaagactaatgtaatattagg |
13866176 |
T |
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| Q |
819 |
gcaaggattcttctctaaagtgaataaagtgtaagtccagaaaatcaaggggtggtcattttaagcacttcagatttgttgt |
900 |
Q |
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| T |
13866177 |
gcaagga---ttctctaaagtgaataaagtgtaaagtcagaaaatcaa-gggttgttattttaaacaactcagatttgttgt |
13866254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 518 - 829
Target Start/End: Original strand, 13891344 - 13891658
Alignment:
| Q |
518 |
tttacagctttctaaactcaaagataacacaccaatactaaaatatacatggaacatttaggttttgtttgaaagttaagagggattggaagaaacagaa |
617 |
Q |
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| T |
13891344 |
tttacggctttccaaagtcaaaaataacaaaccaagactaaaatatacatggaacatttatgttttgtttgaaagttaagagggatgggaagaaacataa |
13891443 |
T |
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| Q |
618 |
gcggacgaaatggaggggaaggtagcatacctaactcccaaacttgcatggaggttgannnnnnnacctaggattaa-----aaaacctccctaatttga |
712 |
Q |
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| T |
13891444 |
ttgaacgaaatggaggggaaggaagtataactaactcccaaacttgcatggaggttgatttttccacctaggattaaaatttaaaacctccataatttga |
13891543 |
T |
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| Q |
713 |
tggaactc----aataaattggaagaagacttggttttggttttggagggcttcaaaaaattgtttaaattctttcggttttttaggtaaaagactaatg |
808 |
Q |
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| T |
13891544 |
tggaactcaaaaaataaattggaagaagac------ttggttttgaagggcttcaaaaaattcttcagattctttcattttttgaggtaaaagactaagg |
13891637 |
T |
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| Q |
809 |
taatattagggcaaggattct |
829 |
Q |
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| T |
13891638 |
tgatattagggcaaggattct |
13891658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 155 - 359
Target Start/End: Original strand, 13890854 - 13891057
Alignment:
| Q |
155 |
gttcttgaagttgatcctgtcaagagagccagaagnnnnnnnnnttaacaccatgcatttaaatgtaaatttaatttatatttactgtctgtgtaaatat |
254 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
13890854 |
gttcttgaagttgatcctgtcaagagagccaggaaaaaaaacaattaacaccatgcatttaaatgtaaatttaatttatatttactatcggtgtaaatat |
13890953 |
T |
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| Q |
255 |
gttttacactaacattcggatcattgaaaatatttgacttttattgtaacttcttttaaagtcgcatattgattggttgtgattcgttgagagtataata |
354 |
Q |
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| T |
13890954 |
gttttacactaattgtcatatcattgaaaatatttgacttttattgtaacaacttttaa-gtcatgtatatattggttgtgatttagtgagagtataata |
13891052 |
T |
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| Q |
355 |
acttt |
359 |
Q |
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||||| |
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| T |
13891053 |
acttt |
13891057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 13885601 - 13885680
Alignment:
| Q |
22 |
gatataggaaaatgcacagttcatcttgttccgttcactttgcaaat-cacaaattggaaactctactccatcgtataat |
100 |
Q |
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|||||| ||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
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| T |
13885601 |
gatataagaacatgcagagttcattttgttccgttcactttgcaaataaacaaattggaaactctacttcatcatataat |
13885680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 13890739 - 13890813
Alignment:
| Q |
22 |
gatataggaaaatgcacagttcatcttgttccgttcac-tttgcaaa---tcacaaattggaaactctactccat |
92 |
Q |
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| T |
13890739 |
gatataggaacatgcacagttcattttgttccgttcacttttgcaaatactaacaaactggaaactctactccat |
13890813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 480
Target Start/End: Original strand, 39515002 - 39515041
Alignment:
| Q |
441 |
tttataatatatatcaaatacaatagttattcaatgaatc |
480 |
Q |
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| T |
39515002 |
tttataatatatatcagatacaatagttatttaatgaatc |
39515041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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