View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4697-Insertion-6 (Length: 342)
Name: NF4697-Insertion-6
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4697-Insertion-6 |
 | |
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| [»] chr1 (16 HSPs) |
| |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 30368547 - 30368213
Alignment:
| Q |
8 |
aatataatatcactagaccataagaatattcgaccaagacatagagagaaacaatgtcaaatgcatcttttagtaaccttgacgttcaagccatatttca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30368547 |
aatataatatcactagaccataagaatattcgaccaagacatagagagcaacaatgtcaaatgcatcttttagtaaccttgacgttcaagccatgtttca |
30368448 |
T |
|
| Q |
108 |
ttcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaac |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30368447 |
ttcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaac |
30368348 |
T |
|
| Q |
208 |
gaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30368347 |
gaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccat |
30368248 |
T |
|
| Q |
308 |
ctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
30368247 |
ctctcaggcttaaattccatgcaatcttctcccca |
30368213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 66 - 342
Target Start/End: Original strand, 13100812 - 13101087
Alignment:
| Q |
66 |
aaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatgtg |
165 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||| |||||| |||| |||| |||| | | ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
13100812 |
aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg |
13100911 |
T |
|
| Q |
166 |
aaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttg |
265 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13100912 |
aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg |
13101010 |
T |
|
| Q |
266 |
gaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13101011 |
taagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccca |
13101087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 63 - 342
Target Start/End: Complemental strand, 13070560 - 13070281
Alignment:
| Q |
63 |
gtcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtat |
162 |
Q |
| |
|
||||||||||||||||||| || || || || ||||||| |||||| |||| |||| ||| | | ||||||||||||||||||||||| |||||||| |
|
|
| T |
13070560 |
gtcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggtgaccttccaccacctgtat |
13070461 |
T |
|
| Q |
163 |
gtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaac |
262 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
13070460 |
gtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctcggacctgtattgaaagctatgaac |
13070361 |
T |
|
| Q |
263 |
ttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13070360 |
ttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctcccca |
13070281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 64 - 342
Target Start/End: Original strand, 13204268 - 13204546
Alignment:
| Q |
64 |
tcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
163 |
Q |
| |
|
|||||||||||||||||| || || || || || ||||||||||| |||| |||| |||| | | ||||||||||||||||||||||| | || |||| |
|
|
| T |
13204268 |
tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg |
13204367 |
T |
|
| Q |
164 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
263 |
Q |
| |
|
||||| ||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
13204368 |
tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact |
13204467 |
T |
|
| Q |
264 |
tggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
|| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13204468 |
tgtaagatggtacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctcccca |
13204546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 63 - 342
Target Start/End: Original strand, 13007008 - 13007287
Alignment:
| Q |
63 |
gtcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtat |
162 |
Q |
| |
|
||||||||||||||||||| || || || |||||||||| |||||| |||| |||| |||| | | ||||||| |||||||||| |||| |||| ||| |
|
|
| T |
13007008 |
gtcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttat |
13007107 |
T |
|
| Q |
163 |
gtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaac |
262 |
Q |
| |
|
||||||||| |||||| || ||||| |||||||||||||||| ||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13007108 |
gtgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaac |
13007207 |
T |
|
| Q |
263 |
ttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13007208 |
ttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctcccca |
13007287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 63 - 342
Target Start/End: Original strand, 13094207 - 13094486
Alignment:
| Q |
63 |
gtcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtat |
162 |
Q |
| |
|
||||||||| |||||||| || | || |||||||||| |||||| ||||| | |||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13094207 |
gtcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtat |
13094306 |
T |
|
| Q |
163 |
gtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaac |
262 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||| |||||||| ||||||||| |||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
13094307 |
gtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaattctgggtcctgtgttgaaagctatgaac |
13094406 |
T |
|
| Q |
263 |
ttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
||| |||||||||||| |||||| | ||| ||||| |||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13094407 |
ttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctcccca |
13094486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 63 - 342
Target Start/End: Original strand, 13129636 - 13129915
Alignment:
| Q |
63 |
gtcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtat |
162 |
Q |
| |
|
||||||||| |||||||| || | || |||||||||| |||||| ||||| | |||||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13129636 |
gtcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtat |
13129735 |
T |
|
| Q |
163 |
gtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaac |
262 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||| |||| |||||||| |||||||||| |||| |
|
|
| T |
13129736 |
gtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctgggtcctgtgttgaaagctacgaac |
13129835 |
T |
|
| Q |
263 |
ttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
||| |||||||||||| |||||| | ||| ||||| |||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13129836 |
ttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctcccca |
13129915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 63 - 342
Target Start/End: Original strand, 13161329 - 13161608
Alignment:
| Q |
63 |
gtcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtat |
162 |
Q |
| |
|
||||||||| |||||||| || | || |||||||||| |||||| ||||| | |||||| ||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
13161329 |
gtcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtat |
13161428 |
T |
|
| Q |
163 |
gtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaac |
262 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||| ||||||| |
|
|
| T |
13161429 |
gtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctgggtcctgtgttgaaagatatgaac |
13161528 |
T |
|
| Q |
263 |
ttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
||| |||| ||||||| |||||| | ||| ||||| |||| |||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
13161529 |
ttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttcccccca |
13161608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 64 - 342
Target Start/End: Complemental strand, 13244904 - 13244626
Alignment:
| Q |
64 |
tcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
163 |
Q |
| |
|
|||||||||||||||| | || | ||| || ||||| | |||||| |||| ||||| ||||| || | |||||||||||||||||||| ||||||||| |
|
|
| T |
13244904 |
tcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacctgtatg |
13244805 |
T |
|
| Q |
164 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
263 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
13244804 |
cgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaaagctatgaact |
13244705 |
T |
|
| Q |
264 |
tggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
|| |||| |||||||||||||| |||||| |||||| |||||| ||||||||||| |||| |||||| |||||||| |
|
|
| T |
13244704 |
tgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctcccca |
13244626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 126 - 333
Target Start/End: Original strand, 13271457 - 13271664
Alignment:
| Q |
126 |
ccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacc |
225 |
Q |
| |
|
||||||| || |||| ||||||||||| || |||||||||||||||||||| | | |||||||||||| |||||||||| || |||| |||||| || |
|
|
| T |
13271457 |
ccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttccc |
13271556 |
T |
|
| Q |
226 |
catacaacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactcc |
325 |
Q |
| |
|
| ||| |||||||| |||| |||||| |||||||||||| |||||||||||| |||||| |||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
13271557 |
aagacagcttctaggacctgcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactcc |
13271656 |
T |
|
| Q |
326 |
atgcaatc |
333 |
Q |
| |
|
| |||||| |
|
|
| T |
13271657 |
aagcaatc |
13271664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 64 - 342
Target Start/End: Complemental strand, 13065596 - 13065318
Alignment:
| Q |
64 |
tcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
163 |
Q |
| |
|
|||||||||||||||||| || |||| |||||||||| |||||||| ||| || |||| ||| || |||||||| ||||| ||||| | |||||| |
|
|
| T |
13065596 |
tcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatgtatg |
13065497 |
T |
|
| Q |
164 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
263 |
Q |
| |
|
||||||||||| | || || ||| |||||||||||| |||||| | | ||||||||||| ||||||||| || |||| ||||||||||||||||| |
|
|
| T |
13065496 |
caaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatgaact |
13065397 |
T |
|
| Q |
264 |
tggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
|| |||| ||||||| |||||| ||||| || | ||||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13065396 |
tgtaagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccatgcagtcttctcccca |
13065318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 64 - 342
Target Start/End: Complemental strand, 13081248 - 13080970
Alignment:
| Q |
64 |
tcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
163 |
Q |
| |
|
|||||||||||||||| || ||||| || ||||||| || ||| ||||||| || |||| ||||||| ||| | |||||||||||| ||||| ||| |
|
|
| T |
13081248 |
tcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacctgaatg |
13081149 |
T |
|
| Q |
164 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
263 |
Q |
| |
|
|||||||| |||| | |||||||||||||| |||||||||| ||||||| |||||| || | ||| ||||| || |||| ||| || |||||||||| |
|
|
| T |
13081148 |
tgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctatgaact |
13081049 |
T |
|
| Q |
264 |
tggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
| |||| || || | |||||| |||||||| ||||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
13081048 |
tataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctcccca |
13080970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 342
Target Start/End: Complemental strand, 12964258 - 12963980
Alignment:
| Q |
64 |
tcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
163 |
Q |
| |
|
|||||||||||||| | | || ||||| ||||| |||| |||||| ||||| || | || | |||| || || ||| |||||||||||| || | |||| |
|
|
| T |
12964258 |
tcaaatgcatctttgactgactttgaccttcaaaccatgtttcatacgaagaaccatagcaacccttggagtaacaaagtgaccttccaccacttctatg |
12964159 |
T |
|
| Q |
164 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
263 |
Q |
| |
|
||||||||||| |||| ||| |||||||| ||||||||||| || |||| |||||| || |||||||||||||| |||| |||||| |||||||||| |
|
|
| T |
12964158 |
tgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaatgctatgaact |
12964059 |
T |
|
| Q |
264 |
tggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
| ||||||| || | |||||| | |||||| | ||||| |||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
12964058 |
tataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctcccca |
12963980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 321
Target Start/End: Original strand, 13085916 - 13086173
Alignment:
| Q |
64 |
tcaaatgcatcttttagtaaccttgacgttcaagccatatttcattcgaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
163 |
Q |
| |
|
|||||| ||||||||| |||| ||||| || || |||| || ||| || || |||| |||| | || || ||||||| ||||||||||| || |||||| |
|
|
| T |
13085916 |
tcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg |
13086015 |
T |
|
| Q |
164 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
263 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| | |||| |||||| || | |||||||| ||| |||| ||| || |||||||||| |
|
|
| T |
13086016 |
tgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctatgaact |
13086115 |
T |
|
| Q |
264 |
tggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaa |
321 |
Q |
| |
|
|| |||||||||||| | ||| |||||| | ||||||| ||||||||| |||||||| |
|
|
| T |
13086116 |
tgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaa |
13086173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 142 - 316
Target Start/End: Complemental strand, 19279473 - 19279299
Alignment:
| Q |
142 |
gtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggt |
241 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||| |||| ||| |||||| || | ||| ||||| || |
|
|
| T |
19279473 |
gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga |
19279374 |
T |
|
| Q |
242 |
cctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggc |
316 |
Q |
| |
|
|||| ||| || |||||||||||| | |||||||||| |||||| |||||||| || |||| ||||||||||||| |
|
|
| T |
19279373 |
cctgcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggc |
19279299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 13010661 - 13010739
Alignment:
| Q |
143 |
tgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctt |
221 |
Q |
| |
|
||||||||||| || |||||| |||| ||||||||||| ||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
13010661 |
tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcattagaatgaaactaagatctt |
13010739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 31380325 - 31380253
Alignment:
| Q |
193 |
catcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttg |
265 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
31380325 |
catcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg |
31380253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 377627 - 377575
Alignment:
| Q |
290 |
cctctctctgatacccatctctcaggcttaaactccatgcaatcttctcccca |
342 |
Q |
| |
|
|||||||| |||| ||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
377627 |
cctctctcagatatccatctctctggcttgaactccaagcaatcttctcccca |
377575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 3321773 - 3321652
Alignment:
| Q |
221 |
ttacccatacaacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaa |
320 |
Q |
| |
|
||||||| |||||| || ||||| | ||||||||| || |||||| |||| ||||||| || || | |||| ||| || | ||| ||||| || |||| |
|
|
| T |
3321773 |
ttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatccacctctctggtttaa |
3321674 |
T |
|
| Q |
321 |
actccatgcaatcttctcccca |
342 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
3321673 |
actccaagcaatcttctcccca |
3321652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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