View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4697_low_1 (Length: 553)

Name: NF4697_low_1
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4697_low_1
NF4697_low_1
[»] chr2 (2 HSPs)
chr2 (1-536)||(26397940-26398475)
chr2 (19-245)||(26459516-26459742)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-536)||(30225-30760)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-536)||(277335-277870)
[»] chr4 (2 HSPs)
chr4 (19-375)||(20646684-20647040)
chr4 (2-249)||(56107857-56108104)
[»] chr1 (1 HSPs)
chr1 (21-375)||(845854-846209)
[»] chr7 (1 HSPs)
chr7 (2-154)||(6965224-6965376)
[»] chr6 (1 HSPs)
chr6 (2-249)||(26013624-26013871)
[»] chr5 (1 HSPs)
chr5 (22-78)||(13863507-13863563)
[»] chr3 (1 HSPs)
chr3 (41-305)||(33001788-33002052)


Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 26397940 - 26398475
Alignment:
Q  1 cccattttccatcacatcttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcac 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26397940 cccattttccatcacatcttcttttaatatgtaagccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttccc 26398039  T
Q  101 atatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26398040 atatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatat 26398139  T
Q  201 cgaacatagaaagaataagcatcttcctgtgactcaaattccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26398140 cgaacatagaaagaataagcatcttcctgtgactcaaattccattccaagagaaggttgttcaaaattgttagcatctaaatcaccaacatatgaatcac 26398239  T
Q  301 tattgacggtctcatttataacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaaatagttacaactaattatcaatacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26398240 tattgacggtctcatttataacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaaatagttacaactaattatcaataca 26398339  T
Q  401 tgttgaacaaacataaaaaacagaataaaatattttcaaagacaaagttatagtaccaaattcatgttttttaatataggggaatcacatgcattgacaa 500  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26398340 tgttgaacaaacataaaaaactcaataaaatattttcaaagacaaagtgatagtaccaaattcatgttttttaatacaggggaatcacatgcattgacaa 26398439  T
Q  501 tgaggagaacaaaaacgtaccttaaaaagtgaaata 536  Q
     ||||||| |||||||||||||||||||||||||||    
T  26398440 agaggagagcaaaaacgtaccttaaaaagtgaaata 26398475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 26459742 - 26459516
Alignment:
Q  19 ttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcacatatcttgtgcaagcata 118  Q
    ||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||||||  | ||||| |||||||||||  ||| ||| |||||||||||    
T  26459742 ttcttttgatatgtaaggcagccccacattcaaccttcaaacaaggacgtggattttgcaccgtcgattctcgttttttaccatgtctcgtgcaagcata 26459643  T
Q  119 tttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataa 218  Q
    ||||||||||||||||||| |||||||||| ||||| || || |||||| || ||||||||||||||||||||||||||||| || ||||||||||||||    
T  26459642 tttcacatcaataaattgtttagaaattttcgaacgacggctacttttagtgcatacaccaaatccgacacatttagcatattgagcatagaaagaataa 26459543  T
Q  219 gcatcttcctgtgactcaaattccatt 245  Q
    |||||||| ||||||||||||||||||    
T  26459542 gcatcttcttgtgactcaaattccatt 26459516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 30225 - 30760
Alignment:
Q  1 cccattttccatcacatcttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30225 cccattttccatcacatcttcttctaatatgtaagccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttccc 30324  T
Q  101 atatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30325 atatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgattgcttttaatggatacaccaaatccgacacatttagcatat 30424  T
Q  201 cgaacatagaaagaataagcatcttcctgtgactcaaattccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30425 cgaacatagaaagaataagcatcttcctgtgactcaaattccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcac 30524  T
Q  301 tattgacggtctcatttataacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaaatagttacaactaattatcaatacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30525 tattgacggtctcatttataacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaaatagttacaactaattatcaataca 30624  T
Q  401 tgttgaacaaacataaaaaacagaataaaatattttcaaagacaaagttatagtaccaaattcatgttttttaatataggggaatcacatgcattgacaa 500  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30625 tgttgaacaaacataaaaaactcaataaaatattttcaaagacaaagtgatagtaccaaattcatgttttttaatacaggggaatcacatgcattgacaa 30724  T
Q  501 tgaggagaacaaaaacgtaccttaaaaagtgaaata 536  Q
    ||||||||||||||  ||||||||||||||||||||    
T  30725 tgaggagaacaaaagtgtaccttaaaaagtgaaata 30760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 277335 - 277870
Alignment:
Q  1 cccattttccatcacatcttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcac 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  277335 cccattttccatcacatcttcttttaatatgtaagccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttccc 277434  T
Q  101 atatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  277435 atatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgattgcttttaatggatacaccaaatccgacacatttagcatat 277534  T
Q  201 cgaacatagaaagaataagcatcttcctgtgactcaaattccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  277535 cgaacatagaaagaataagcatcttcctgtgactcaaattccattccaagagaaggttgtttaaaattgttagcatctaaatcaccaacatatgaatcac 277634  T
Q  301 tattgacggtctcatttataacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaaatagttacaactaattatcaatacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  277635 tattgacggtctcatttataacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaaatagttacaactaattatcaataca 277734  T
Q  401 tgttgaacaaacataaaaaacagaataaaatattttcaaagacaaagttatagtaccaaattcatgttttttaatataggggaatcacatgcattgacaa 500  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  277735 tgttgaacaaacataaaaaactcaataaaatattttcaaagacaaagtgatagtaccaaattcatgttttttaatacaggggaatcacatgcattgacaa 277834  T
Q  501 tgaggagaacaaaaacgtaccttaaaaagtgaaata 536  Q
    |||||||| |||||  ||| ||||||||||||||||    
T  277835 tgaggagatcaaaattgtatcttaaaaagtgaaata 277870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 20646684 - 20647040
Alignment:
Q  19 ttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcacatatcttgtgcaagcata 118  Q
    ||||||| ||||||||  ||||| |||||||||||||||||  |||||||||||||||||| ||||| |||||||||||  ||| ||| |||||||||||    
T  20646684 ttctttttatatgtaaggcagccccacattccaccttcaaaagaggacgtggattttgtgccgtcgattctcgttttttaccatgtctcgtgcaagcata 20646783  T
Q  119 tttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataa 218  Q
    ||||||||||||||||||| || ||||||| ||||| ||||| |||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||    
T  20646784 tttcacatcaataaattgtttataaattttcgaacgacgactacttttagtgcatacaccaaatccgacacatttatcatattgagcatagaaagaataa 20646883  T
Q  219 gcatcttcctgtgactcaaattccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcactattgacggtctcattta 318  Q
    |||||||| ||||||||||||||||||||||   |||||| || |   |  ||| | ||||||||| |||||||||| ||||||| ||| | ||||||      
T  20646884 gcatcttcttgtgactcaaattccattccaatgtaaggttcttcatggtccttaacctctaaatcagcaacatatgattcactatggactggctcattgg 20646983  T
Q  319 taacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaa 375  Q
     ||||  |||||| |||||||  || |||||||||| ||||||||||||||||||||    
T  20646984 caacacactcttcattttcattgataggttccattagttcctaatatatgtataaaa 20647040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 56108104 - 56107857
Alignment:
Q  2 ccattttccatcacatcttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcaca 101  Q
    |||||||||||||||  ||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||   | || ||||| || ||  |     
T  56108104 ccattttccatcacaaattcttttaacacgtaaactagcctcacatcccaccttcaaacaaggacgtggattttgtgaactggattctcgcttcttgccg 56108005  T
Q  102 tatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatc 201  Q
    |||||||||||||||||  | ||||||||||| | ||||||||| |||||||| |||||  ||||||| ||||  ||||| || ||  ||||||||||      
T  56108004 tatcttgtgcaagcataacttacatcaataaactctctagaaatctttgaacgacgactatttttaattgatatcccaaacccaactgatttagcataat 56107905  T
Q  202 gaacatagaaagaataagcatcttcctgtgactcaaattccattccaa 249  Q
    ||   ||||| |||||||||| ||| ||||| ||||||||||||||||    
T  56107904 gagtgtagaacgaataagcattttcttgtgaatcaaattccattccaa 56107857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 845854 - 846209
Alignment:
Q  21 cttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcac-atatcttgtgcaagcatat 119  Q
    ||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||  || || ||||||||||| || || ||| | ||||||||||    
T  845854 cttttgatatgtaaggcagccccacattccaccttcaaacaaggacgtggattttgtgtcgttgattctcgtttttttaccatgtctcgggcaagcatat 845953  T
Q  120 ttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataag 219  Q
    |||||||||||||||||| || |||||||  |||| ||||| |||||| || ||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  845954 ttcacatcaataaattgtttaaaaattttcaaacgacgactacttttagtgcatacacctaatccaacacatttagcatatcgagcatagaaagaataag 846053  T
Q  220 catcttcctgtgactcaaattccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcactattgacggtctcatttat 319  Q
    ||||||| ||||||||||||||||||||||   |||||| || | | || ||| | ||||||||| |||||||||| ||||| ||||| | ||||||       
T  846054 catcttcttgtgactcaaattccattccaatgtaaggttcttcatagttcttaacctctaaatcagcaacatatgattcactgttgacaggctcattggc 846153  T
Q  320 aacatgctcttcgttttcatcaatgggttccattaattcctaatatatgtataaaa 375  Q
    ||||  |||||| |||||||| || ||||| |||| ||  ||||||||||||||||    
T  846154 aacacactcttcattttcatcgataggttctattagtttgtaatatatgtataaaa 846209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 6965376 - 6965224
Alignment:
Q  2 ccattttccatcacatcttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcaca 101  Q
    |||||||||||||||  ||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||   | || ||||| || ||  |     
T  6965376 ccattttccatcacaaattcttttaacacgtaaactagcctcacatcccaccttcaaacaaggacgtggattttgtgaactggattctcgcttcttgccg 6965277  T
Q  102 tatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacg 154  Q
    |||||||||||||||||  | ||||||||||| | ||||||||| ||||||||    
T  6965276 tatcttgtgcaagcataacttacatcaataaactctctagaaatctttgaacg 6965224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 26013871 - 26013624
Alignment:
Q  2 ccattttccatcacatcttcttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcaca 101  Q
    |||||||||||||||  ||||||||| |  ||||| |||||||||| ||||||||||||||||||||||||||||||   | || ||||| || ||  |     
T  26013871 ccattttccatcacaaattcttttaacacataaactagcctcacatcccaccttcaaacaaggacgtggattttgtgaactagattctcgcttcttgccg 26013772  T
Q  102 tatcttgtgcaagcatatttcacatcaataaattgtctagaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatc 201  Q
    ||||| |||||||||||  | ||||||||||| | ||||||||| |||||||| |  ||  ||||||| ||||  ||||| || ||  | ||||||||      
T  26013771 tatctcgtgcaagcataacttacatcaataaactctctagaaatctttgaacgacagctatttttaattgatatcccaaacccaactgacttagcataat 26013672  T
Q  202 gaacatagaaagaataagcatcttcctgtgactcaaattccattccaa 249  Q
    ||   ||||| |||||||||| ||| ||||| ||||||| ||||||||    
T  26013671 gagtgtagaacgaataagcattttcttgtgaatcaaatttcattccaa 26013624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 13863563 - 13863507
Alignment:
Q  22 ttttaatatgtaaaccagcctcacattccaccttcaaacaaggacgtggattttgtg 78  Q
    |||||||| |||||| |||||| ||| ||||||||||| ||||||||||||||||||    
T  13863563 ttttaatacgtaaactagcctcgcatcccaccttcaaataaggacgtggattttgtg 13863507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 305
Target Start/End: Complemental strand, 33002052 - 33001788
Alignment:
Q  41 ctcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcacatatcttgtgcaagcatatttcacatcaataaattgtcta 140  Q
    |||||| | ||||||||||||||||||||| || | ||| || ||  |||  |||||  |||||||||||||||||||  |||||||||||||||   ||    
T  33002052 ctcacaattcaccttcaaacaaggacgtgggttatctgctgtggatgctctcttttttccatatcttgtgcaagcataagtcacatcaataaattccgta 33001953  T
Q  141 gaaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataagcatcttcctgtgactcaaatt 240  Q
    ||||  ||||||||   |||  |||| ||||| |  |||||  | ||| ||||||||||  ||   ||||| || || || | ||| |||||||||||||    
T  33001952 gaaacctttgaacgcttactagttttgatggaaattccaaactcaacagatttagcataaagagagtagaatgagtatgccttttcttgtgactcaaatt 33001853  T
Q  241 ccattccaagagaaggttgttgaaaattgttagcatctaaatcaccaacatatgaatcactattg 305  Q
    ||||||| | | |||||| ||||  ||  |||||  || ||||||||||| |||||||| |||||    
T  33001852 ccattccgatacaaggttcttgactatcattagctcctgaatcaccaacacatgaatcattattg 33001788  T

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