View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4697_low_2 (Length: 411)
Name: NF4697_low_2
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4697_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 33499804 - 33500166
Alignment:
| Q |
1 |
gtccccagttgggtgatttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccatcgat |
100 |
Q |
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| T |
33499804 |
gtccccagttgggtgatttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccatcgat |
33499903 |
T |
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| Q |
101 |
tgatgatttggtcttgttgactttgatggaacatctgctcaggctaaagactgaagacttgcgcacannnnnnngcttactgaattatgttatcattgtg |
200 |
Q |
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| T |
33499904 |
tgatgatttggtcttgttgactttgatggaacatctgctcaggctaaagactgaagacttgcgcacatttttttgcttactgaattatgttatcattgtg |
33500003 |
T |
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| Q |
201 |
tttggttgtgagtgataattccaagcttaagcattcttttaataataaagaaattctttaatttgttggatatttcattgcaaatcacttggctaagtta |
300 |
Q |
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| T |
33500004 |
tttggttgtgagtgataattccaagcttaagcattcttttaataataaagaaattctttaatttgttggatatttcattgcaaatcacttggctaagtta |
33500103 |
T |
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| Q |
301 |
gctaatagacaacaatgatatttggagatcctctaactccccaacacacttcaacatcttcaa |
363 |
Q |
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| T |
33500104 |
gctaatagacaacaatgatatttggagatcctctaactccccaacacacttcaacatcttcaa |
33500166 |
T |
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