View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4697_low_5 (Length: 250)
Name: NF4697_low_5
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4697_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 4476457 - 4476266
Alignment:
| Q |
1 |
atttgaaataatctcatattttaaacatttgtttttcatataattgttaaactaaggtgtaaggtgtgtatggaacnnnnnnntagaccttgaagacatc |
100 |
Q |
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| T |
4476457 |
atttgaaataatctcatattttaaacatttgtttttcatataattgttaaactaaggtgt-------gtatggaacaaaaaaatagaccttgaagacatc |
4476365 |
T |
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| Q |
101 |
atcattctaaaaaagagaaagacagcattttacgtctttattatagtaatctttgaaaacacaaaacatagtcaaataaaatgataattttggcttgac |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4476364 |
atcattctaaaaaagagaaagacagcattttacttctttattatagtaatctttgaaaacacaaaacatactcaaataaaatgataattttggcttgac |
4476266 |
T |
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