View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4697_low_7 (Length: 235)
Name: NF4697_low_7
Description: NF4697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4697_low_7 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30116 - 29889
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30116 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
30017 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30016 |
aaattatttagataaggaccgttgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
29917 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatgatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29916 |
ttttatgcatttgatttggatgatgatg |
29889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26397831 - 26397604
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397831 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaagatatgagaaagttggttgcttggagaaagatgttag |
26397732 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397731 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaaggcaatgctgtagtattttatgcgtatgcaagaagaaaattcaagattc |
26397632 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatgatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26397631 |
ttttatgcatttgatttggatgatgatg |
26397604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26459876 - 26460103
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||||||||||||||| |||| | |||||||| | ||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
26459876 |
ctttgcaacatgttggtgtgaaaccaagcaaattttttgccacacttgcgaaacaacacggagggtatgagaaagttggttgcttggagaaagatattaa |
26459975 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||| |||| | || || || ||||||| || ||||| |||||||| |
|
|
| T |
26459976 |
aaatcttttagataaggatcgtcgtttgactttggaatcaggagatgcaaatgcaatgttggaatgttgtacgcttatgcaaaaacaaaatccaagattc |
26460075 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatgatg |
228 |
Q |
| |
|
|||||||| | |||||||||||||||| |
|
|
| T |
26460076 |
ttttatgcgatggatttggatgatgatg |
26460103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 25830388 - 25830163
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||| ||||||||||| |||| ||||| | |||| || |||||||||||||||||||| ||||| ||||| || || | |||||||||||||| |||| |
|
|
| T |
25830388 |
ctttacaacatgttggggtgaaaacaaccgaaattttcgccacaatggccaaacaacatggagggtatgaaaacattagctgcttggagaaagacattag |
25830289 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||| || ||||| |||| ||||| |||||| |||||||| |||||||||||||||| | ||||| |
|
|
| T |
25830288 |
aaatcatttagataaaagtcgtcgtttggcattagagtcgggagaagcaacaacaatgttggagtgttttatgcttatgcaagaagaaaatcctagattt |
25830189 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatga |
226 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
25830188 |
ttttatgcaattgatttggatgatga |
25830163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 277226 - 276999
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277226 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaagatatgagaaagttggttgcttggagaaagatgttag |
277127 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
277126 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaaggcaatgctgaagtattttatacgtatgcaagaagaaaattcaagattc |
277027 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatgatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
277026 |
ttttatgcatttgatttggatgatgatg |
276999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 845734 - 845527
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||| ||||||||| | || |||||||||||||| ||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
845734 |
ctttgcaacatattggtgtgagaccaagcaaaatttttgccacacttgcgaaacaacacggagggtatgagaaagttggttgctcggaaaaagatattat |
845635 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||| ||||| || |||||||||| |||||||||||||| |
|
|
| T |
845634 |
aaatcttttagataaggatcgtcgtttgactttgaaatcaggagatgcaaatgcaatgttggagtgttttacgcttatgcaagaacaaaattcaagattc |
845535 |
T |
|
| Q |
201 |
ttttatgc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
845534 |
ttttatgc |
845527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 30400057 - 30400171
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||| | | || | | |||||||||| ||| ||||||| || ||||||||||||||||||| |||| |
|
|
| T |
30400057 |
ctttgcaacatgttggggtgaaaacaaccaaaatttacgtcatagcgaccaaacaacatggatgatatgaaaacattggttgcttggagaaagacattag |
30400156 |
T |
|
| Q |
101 |
aaattatttagataa |
115 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
30400157 |
aaatcatttagataa |
30400171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 30406614 - 30406728
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||| | | || | | |||||||||| ||| ||||||| || ||||||||||||||||||| |||| |
|
|
| T |
30406614 |
ctttgcaacatgttggggtgaaaacaaccaaaatttacgtcatagcgaccaaacaacatggatgatatgaaaacattggttgcttggagaaagacattag |
30406713 |
T |
|
| Q |
101 |
aaattatttagataa |
115 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
30406714 |
aaatcatttagataa |
30406728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6965486 - 6965710
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||||||||||| || | ||||||||||| | | |||||||||||||||||||||| || |
|
|
| T |
6965486 |
ctttgcaccatgttggagtgagaacaagcaaattttttgccacaatggccaaagaatatggaggatatgaaaca-ttggttgcttggagaaagatgtaag |
6965584 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
||| |||||||||| | || |||||| |||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| || ||||| |
|
|
| T |
6965585 |
aaaccatttagataaaggtcggcgtttggctttagaatcaggagatgcaaatgcaatgttggattgttttatgctcatgcaagaagaaaatccaggattc |
6965684 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatga |
226 |
Q |
| |
|
||||||||| ||||| |||||||||| |
|
|
| T |
6965685 |
ttttatgcaattgatatggatgatga |
6965710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 20646524 - 20646347
Alignment:
| Q |
51 |
aaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
20646524 |
aaacaacacggaggatatgagaaagttggttgctcggagaaagatattagaaatcttttagataaggatcatcgtttgactttggaatcaggagatgcaa |
20646425 |
T |
|
| Q |
151 |
atgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatg |
228 |
Q |
| |
|
|||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
20646424 |
atgcaatgttggagtgttttacgcttatgcaagaaaaaaattcaagattcttttatgcgatggatttggatgatgatg |
20646347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 56108214 - 56108439
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||| || |||||||||||||||||||||| || |
|
|
| T |
56108214 |
ctttgcaccatgttggagtgagaacaagcaaaatttttgccacaatggccaaagaatatggaggatatgaaaacattggttgcttggagaaagatgtaag |
56108313 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
||| |||||||||| | || |||||| ||||||||| |||||||||||||||||| | || | |||||||| ||||||||||||| | || ||||| |
|
|
| T |
56108314 |
aaaccatttagataaaggtcggcgtttggctttagaatctggagatgcaaatgcaatgttagattgttttatgctcatgcaagaagaaagtccaggattc |
56108413 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatga |
226 |
Q |
| |
|
||||||||| ||||| |||||||||| |
|
|
| T |
56108414 |
ttttatgcaattgatatggatgatga |
56108439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26013981 - 26014206
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||||||||||| || | ||||||||||| || |||||||||||||||||||||| || |
|
|
| T |
26013981 |
ctttgcaccatgttggagtgagaacaagcaaattttttgccacaatggccaaagaatatggaggatatgaaaacattggttgcttggagaaagatgtaag |
26014080 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
||| |||||||||| | || |||||| ||||||||| |||||||||||||||||| |||| | |||||||| ||||||||||||| | || ||||| |
|
|
| T |
26014081 |
aaaccatttagataaaggtcggcgtttggctttagaatctggagatgcaaatgcaatgttggattgttttatgctcatgcaagaagaaagtccaggattc |
26014180 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatga |
226 |
Q |
| |
|
||||||||| ||||| |||||||||| |
|
|
| T |
26014181 |
ttttatgcaattgatatggatgatga |
26014206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33002201 - 33002425
Alignment:
| Q |
1 |
ctttgcaacatgttggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttag |
100 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||| || |||||||||||||||||||| ||||| ||||| || |||| |||||||||||||| |||| |
|
|
| T |
33002201 |
ctttacaacatgttggggtgaaaacaaccaaaattttcgccacaatggccaaacaacatggagggtatgaaaacattggatgcttggagaaagacattag |
33002300 |
T |
|
| Q |
101 |
aaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattc |
200 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||| || |||||||||| ||||| |||||| |||||||| |||||||||||||||| | ||||| |
|
|
| T |
33002301 |
aaatcatttagataaaagtcgtcgtttggcattagagtcgggagatgcaacaacaatgttggagtgttttatgcttatgcaagaagaaaatcctagatt- |
33002399 |
T |
|
| Q |
201 |
ttttatgcatttgatttggatgatga |
226 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
33002400 |
ttttatgcaattgatttggatgatga |
33002425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13863693 - 13863782
Alignment:
| Q |
1 |
ctttgcaacatgtt-ggagtgagaacaagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggag |
89 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| | |||||||||||||||||| || | | | ||||||| || |||||||||||||| |
|
|
| T |
13863693 |
ctttgcaccatgtttggagtgagaacaagcaaattttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag |
13863782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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