View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-1 (Length: 1016)
Name: NF4698-Insertion-1
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 939; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 939; E-Value: 0
Query Start/End: Original strand, 8 - 1014
Target Start/End: Original strand, 29145215 - 29146221
Alignment:
| Q |
8 |
tatccaacacatgtcggacacatttgacactcgtggttacattctctcaaattattactggtgtcaatgagaagtggcaatgtcgtgtccagtgtcaatg |
107 |
Q |
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| T |
29145215 |
tatccaacacatgtcggacacatttgacactcgtggttacattctctcaaattattactg-tgtcaatgagaagtggcaatgtcgtgtccagtgtcaatg |
29145313 |
T |
|
| Q |
108 |
cttcatacgttttcttttttggcacttgtttaggattttccaatcttaattttctgcatttattgctttctaagggctctctaattttaaatttatgata |
207 |
Q |
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| T |
29145314 |
cttcatacgtttt-ttttttggcacttgtttaggattttccaatcttaattttctgcatttattgctttctaagggctctctaattttaaatttatgata |
29145412 |
T |
|
| Q |
208 |
tgcttcgtgaatataactaagcaagtttggaagcatatatttgtagaataaccatgactagttttatgaagcgaattgaattggaccgttgtccacaact |
307 |
Q |
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| T |
29145413 |
tgcttcgtgaatataactaagcaagtttggaagcatatatttgtagaataaccatgactagttttatgaagcgaattgaattggaccgttgtccacaact |
29145512 |
T |
|
| Q |
308 |
tgaatgttcaataattgatgatttgagtaaatatttgagcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaagggaagctgaggaaac |
407 |
Q |
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| T |
29145513 |
tgaatgttcaataattgatgatttgagtaaatatttgagcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaagggaagctgaggaaac |
29145612 |
T |
|
| Q |
408 |
acatctctaaaatgcaaggtaaggactcgattatgtacatttaaaaaatgtatttaaacgcactaattgatctcgatcatcgatttgaaaccatctttaa |
507 |
Q |
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| T |
29145613 |
acatctctaaaatgcaaggtaaggactcgattatgtacatttaaaaaatgtatttaaacgcactaattgatctcgatcatcgatttaaaactatctttaa |
29145712 |
T |
|
| Q |
508 |
ataatctttcactgttcaatttaagatcgaacggtcaataaatatgtcacgcatttacggattggaattcaaatatgagattttaatgttgttgatttta |
607 |
Q |
| |
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| T |
29145713 |
ataatctttcactgttcaatttaagatcgaacggtcaataaatatgtcacgcatttacggattggaattcaaatatgagattttaatgttgttgatttta |
29145812 |
T |
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| Q |
608 |
ttggcaggagttacctccttcaacatagattttgctgcaaagaaggtgacaatagttggggatgtgactccatttagtgtgttggcaagcatatcaaagg |
707 |
Q |
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| T |
29145813 |
ttggcaggagttacctccttcaacatagattttgctgcaaagaaggtgacaatagttggggatgtgactccatttagtgtgttggcaagcatatcaaagg |
29145912 |
T |
|
| Q |
708 |
tgaagaatgcacaattttggccctcacttggatctgacaccaaagaaaccaaattcatctaattaggaggaaagttgaatatttatggcattgatgtacc |
807 |
Q |
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| T |
29145913 |
tgaagaatgcacaattttggccatcacttggatctgacaccaaagaaaccaaattcatctaattaggaagaaagttgaatatttatggcattgatgtacc |
29146012 |
T |
|
| Q |
808 |
ctttaatattaatttaccaatttaattattgtaatttttaaatgcagattttagcaagggttactctgtctttgaaagcagttagggggtggcggtagag |
907 |
Q |
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| T |
29146013 |
ctttaatattaatttatcaatttaattattgtaatttttaaatgcagattttagcaagggttactctgtctttgaaagcagttagggggtggtggtagag |
29146112 |
T |
|
| Q |
908 |
taaaatcatgaaatttacatgcattttttattcatgcttgattct-atatgtattagtattttgtttttggtttcttg--aaaaaagaatgcacatagtg |
1004 |
Q |
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| T |
29146113 |
taaaatcatgaaatttacatgcattttttattcatgcttgattctaatatgtaatagtattttgttttt-gtttcttgaaaaaaaagaatgcacatagtg |
29146211 |
T |
|
| Q |
1005 |
tcacaagtca |
1014 |
Q |
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| T |
29146212 |
tcacaagtca |
29146221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 610 - 729
Target Start/End: Original strand, 40454393 - 40454512
Alignment:
| Q |
610 |
ggcaggagttacctccttcaacatagattttgctgcaaagaaggtgacaatagttggggatgtgactccatttagtgtgttggcaagcatatcaaaggtg |
709 |
Q |
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|||||| ||||| |||||||||||||| ||||| || |||||||| ||| ||||||| ||||| |||||||| || || |||||||||||||||||||| |
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| T |
40454393 |
ggcaggggttacgtccttcaacatagactttgcagccaagaaggttacagtagttggtgatgtaactccattgagcgtaatggcaagcatatcaaaggtg |
40454492 |
T |
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| Q |
710 |
aagaatgcacaattttggcc |
729 |
Q |
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| T |
40454493 |
aagactgcacaaatttggcc |
40454512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 40454024 - 40454106
Alignment:
| Q |
346 |
gcaggttgtggtattgagggtttctttgcattgcaaagggtgtgaagggaagctgaggaaacacatctctaaaatgcaaggta |
428 |
Q |
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|||||||||||| |||||||||||| ||||||| ||||| |||||||||||| | |||||||| |||| | ||||||||||| |
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| T |
40454024 |
gcaggttgtggtgttgagggtttctctgcattgtaaaggttgtgaagggaaggtcaggaaacatctctccagaatgcaaggta |
40454106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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