View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4698-Insertion-11 (Length: 566)

Name: NF4698-Insertion-11
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4698-Insertion-11
NF4698-Insertion-11
[»] chr6 (9 HSPs)
chr6 (11-566)||(11669937-11670491)
chr6 (216-465)||(11628227-11628476)
chr6 (222-465)||(11622039-11622282)
chr6 (222-465)||(11706346-11706589)
chr6 (235-465)||(11735544-11735774)
chr6 (222-465)||(11666938-11667181)
chr6 (225-465)||(11759729-11759969)
chr6 (222-457)||(12089451-12089686)
chr6 (29-150)||(11706105-11706228)
[»] scaffold0196 (1 HSPs)
scaffold0196 (222-464)||(16441-16683)
[»] scaffold0019 (1 HSPs)
scaffold0019 (222-566)||(4809-5154)
[»] chr8 (2 HSPs)
chr8 (236-470)||(16389624-16389858)
chr8 (29-134)||(16389368-16389473)
[»] chr1 (1 HSPs)
chr1 (222-465)||(44815447-44815690)


Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Original strand, 11669937 - 11670491
Alignment:
Q  11 cctaaccttttatttttcatgatttcaaatgtgaaagtcaagtaccatacattttacatgttatcatttatgtgatatacaagacattttatgcactttg 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  11669937 cctaaccttttctttttcatgatttcaaatgtgaaagtcaagtaccatacattttacatgttatcatttatgtgatatacaagatattttatgcacttta 11670036  T
Q  111 cactcttaccttttccacacatatcaacagaaaaatatttgttgatggattagtctgaaagtgtttgttatatgagataaatagacnnnnnnnctgaaga 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  11670037 cactcttacattttccacacatatcaacagaaaaatatttgtttatggattagtctgaaagtgtttgttatatgagataaatagacaaaaaaactgaaga 11670136  T
Q  211 aaaagaactcgccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagc 310  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11670137 aaa-gaactcaccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctactgtgatcaccgtacaatctgcaaactcagc 11670235  T
Q  311 cctaatggttttctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgcccc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11670236 cctaatggttttctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctacttcgcctcaaaagtacacgcccc 11670335  T
Q  411 aaacaaaataactgcctttgtcccatgctccaatttgatccatcttcaacaactgggaaacaactttcacggctcattactaactcggagaaaatgattt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11670336 aaacaaaataactgcctttgtcccatgctccaatttgatccatcttcaacaactgggaaacaaatttcacggctcattactaactcggagaaaatgattt 11670435  T
Q  511 tccatcatagctataacattgaaacttgaaagtgtacctgatgagtttaaaccctc 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11670436 tccatcatagctataacattgaaacttgaaagtgtacctgatgagtttaaaccctc 11670491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 216 - 465
Target Start/End: Original strand, 11628227 - 11628476
Alignment:
Q  216 aactcgccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaa 315  Q
    ||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  11628227 aactcaccatcacttatggcaagaaccatactgcaatccatcacagttggtatcctatgtgccactgtgatcactgtacaatctgcaaactcagccctaa 11628326  T
Q  316 tggttttctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaaca 415  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||| | |||||||||  |||||||||||||    
T  11628327 tggttttctggagaataagatcagtagaattatcaatcgaagcagttgcttcatccaacaccaatattcgacttctcctcaaaagcgcacgccccaaaca 11628426  T
Q  416 aaataactgcctttgtcccatgctccaatttgatccatcttcaacaactg 465  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11628427 gaataactgcctttgtcccatgctccagtttgatccatcttcaacaactg 11628476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 222 - 465
Target Start/End: Complemental strand, 11622282 - 11622039
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||||    
T  11622282 ccatcacttatagcaagaaccatattgcaatccatcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaactcagccctaatggttt 11622183  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |  ||||||||  |||| |||||||| |||||    
T  11622182 tctgcacaatcagatcagtagaattatcaattgacgcagttgcttcgtccaataccaaaatcttacttcttctcaaaagagcacgtcccaaacagaataa 11622083  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttcaacaactg 465  Q
    ||| | ||||||||||||||| ||||||||||| ||||||||||    
T  11622082 ctgtcgttgtcccatgctccagtttgatccatcctcaacaactg 11622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 222 - 465
Target Start/End: Original strand, 11706346 - 11706589
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    |||||||| || | ||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||| |||||||||||||||  ||||||||||    
T  11706346 ccatcactgattgaaagaaccatagtgcaatccatcacagtcggtatcctgtgagctactgtgatcaccgtagaatctgcaaactcagttctaatggttt 11706445  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    |||||||||| |||||||| || |||||||| || ||||||||||| || |  |||||||| | ||| | ||| |||||  ||||||||||||| |||||    
T  11706446 tctgcagaatcagatcagttgagttatcaatcgatgcagttgcttcatcgagtaccaatattcgacttctccttaaaagcgcacgccccaaacagaataa 11706545  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttcaacaactg 465  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  11706546 ctgcctttgtcccatgctccagtttgatccatcttcaacaactg 11706589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 235 - 465
Target Start/End: Original strand, 11735544 - 11735774
Alignment:
Q  235 caagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttttctgcagaataag 334  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||    ||||||||||| || ||||| |     
T  11735544 caagaaccatattgcaatccatcacagttggtatcctgtgtgctaccgtgatcacagtacaatctgcaaactcctttctaatggttttttgtagaatcat 11735643  T
Q  335 atcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataactgcctttgtccc 434  Q
    ||| || |||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||   ||||||||||||| ||||| ||| |||||||     
T  11735644 atccgttgaattatcaattgatgcagttgcttcatccaacactaatatcctacttcgcctcaaaatagcacgccccaaacagaataattgcttttgtcca 11735743  T
Q  435 atgctccaatttgatccatcttcaacaactg 465  Q
    |||||||||||||||||||||||||||||||    
T  11735744 atgctccaatttgatccatcttcaacaactg 11735774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 222 - 465
Target Start/End: Complemental strand, 11667181 - 11666938
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    |||||||| || | |||||||||| |||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||  ||||| ||||    
T  11667181 ccatcactgattgaaagaaccatattgcagtccatcacagtttgtatcctgtgagctactgtgatcaccgtacaatctgcaaactcagttctaatagttt 11667082  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    |||||||||| |||||||| || |||||||| || ||||||||||| || |  | |||||| | ||| | ||| |||||| ||||||||||||| |||||    
T  11667081 tctgcagaatcagatcagttgagttatcaatcgatgcagttgcttcatcaagtatcaatattcgacttctccttaaaagtgcacgccccaaacagaataa 11666982  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttcaacaactg 465  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  11666981 ctgcctttgtcccatgctccagtttgatccatcatcaacaactg 11666938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 225 - 465
Target Start/End: Complemental strand, 11759969 - 11759729
Alignment:
Q  225 tcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttttct 324  Q
    |||||||| | |||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||    |||||||| || |    
T  11759969 tcacttatggaaagaaccatattgcaatccatcacagttggtatcctgtgtgctactgtgatcactgtacaatctgcaaactcttttctaatggtatttt 11759870  T
Q  325 gcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataactg 424  Q
    | ||||| | |||||| | |||||| ||||| ||||||||||| |||||||||||||||||| | | |||||||||  | ||||| ||||| ||||  ||    
T  11759869 gaagaattaaatcagtcgcattatcgattgatgcagttgcttcatccaacaccaatatcctatttctcctcaaaagagcgcgccctaaacagaatagttg 11759770  T
Q  425 cctttgtcccatgctccaatttgatccatcttcaacaactg 465  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  11759769 cctttgtccaatgctccagtttgatccatcttcgacaactg 11759729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 222 - 457
Target Start/End: Original strand, 12089451 - 12089686
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    ||||||||||| | |||||||||| |||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||||||||    |||||||| |    
T  12089451 ccatcacttatggaaagaaccatattgcaatccatcacagttggtatcctgtgcgctactgttatcactgtacaatctgcaaactcttttctaatggtat 12089550  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    | || ||||| | ||| || | |||||||||||| ||||||||||| || | ||||||||||||||| | |||||||||  | ||||| ||||| ||||     
T  12089551 tttgaagaattaaatcggtcgcattatcaattgatgcagttgcttcatctagcaccaatatcctacttctcctcaaaagagcgcgccctaaacagaatag 12089650  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttc 457  Q
     ||||||||||| |||||||| || |||||||||||    
T  12089651 ttgcctttgtccaatgctccagttcgatccatcttc 12089686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 11706105 - 11706228
Alignment:
Q  29 atgatttcaaatgtgaaagtcaagtaccatacattttacatgttatcatttatgtgatatacaagacattttatgcactttgcactct--taccttttcc 126  Q
    |||||||||| | ||||| ||||||||||  |||||||||||||||||||||||||  |||||||| ||| | | |||||| ||||||  |||||| |||    
T  11706105 atgatttcaagtttgaaaatcaagtaccactcattttacatgttatcatttatgtgccatacaagatattgttttcactttacactcttataccttgtcc 11706204  T
Q  127 acacatatcaacagaaaaatattt 150  Q
     || |||||||||||||| |||||    
T  11706205 tcaaatatcaacagaaaattattt 11706228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 222 - 464
Target Start/End: Complemental strand, 16683 - 16441
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |||    
T  16683 ccatcacttatagcaagaaccatattgcaatccatcaccgttggtatcctgtgtgctactgtgatcactgtacaatctgcaaactcaaccctaatgtttt 16584  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  | ||||| ||||| |||||    
T  16583 tttgtagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctacttctcctcaaaagagcgcgccctaaacagaataa 16484  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttcaacaact 464  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||    
T  16483 ctgcctttgtcccatactccagtttgatccatcttcaagaact 16441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 222 - 566
Target Start/End: Original strand, 4809 - 5154
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||    
T  4809 ccatcacttatagaaagaaccatattgcaatccatcacagttggtatcctgtgtgctactgtgatcactgtacaatctgcaaactcagccctaatgattt 4908  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    | |||||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||| | |||||||||  | ||| | |||||||||||    
T  4909 tttgcagaatcagatctgtagaattatcaactgatgcagttgcttcatccaacaccaatatcctacttctcctcaaaagagcgcgcgctaaacaaaataa 5008  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttcaacaactgggaaacaactttcacggctcattactaac-tcggagaaaatgattttccatcatag 520  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||  ||  |  ||||||   | ||||||||| | ||| ||||||   |||||  | |     
T  5009 ctgtctttgtcccatgctccaatttgatccaccttcaacaactgttaacaatttttcactatttattactaacatgggaaaaaatgtacttccagaagaa 5108  T
Q  521 ctataacattgaaacttgaaagtgtacctgatgagtttaaaccctc 566  Q
    |||||||| |||| | ||||||||||||||| ||||||||||||||    
T  5109 ctataacaatgaagcatgaaagtgtacctgaggagtttaaaccctc 5154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 236 - 470
Target Start/End: Original strand, 16389624 - 16389858
Alignment:
Q  236 aagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttttctgcagaataaga 335  Q
    ||||||||||||||||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| |  |||||||||||| ||||||||  |    
T  16389624 aagaaccatagtgcaatccatcacagttggaattctgtgcgctactgtgattactgtacaatctgcaaactcggttctaatggttttcagcagaatataa 16389723  T
Q  336 tcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataactgcctttgtccca 435  Q
    ||||| |||||||| | ||| ||||||||||| || |  |||||||| ||||| | ||| |||||  ||||||||||||| ||||| |||||||||||||    
T  16389724 tcagttgaattatcgactgatgcagttgcttcatcaagtaccaatattctacttctccttaaaagcgcacgccccaaacagaataattgcctttgtccca 16389823  T
Q  436 tgctccaatttgatccatcttcaacaactgggaaa 470  Q
    ||||||||||||||||||| |||||||||| ||||    
T  16389824 tgctccaatttgatccatcctcaacaactgcgaaa 16389858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 16389368 - 16389473
Alignment:
Q  29 atgatttcaaatgtgaaagtcaagtaccatacattttacatgttatcatttatgtgatatacaagacattttatgcactttgcactcttaccttttccac 128  Q
    ||||||| || | ||||| ||||||||||  ||||||||||||||||||||||||| ||||||||| ||| | | ||||| ||||||||||||| |||||    
T  16389368 atgatttaaagtttgaaaatcaagtaccactcattttacatgttatcatttatgtgctatacaagatattgttttcacttcgcactcttaccttgtccac 16389467  T
Q  129 acatat 134  Q
    ||||||    
T  16389468 acatat 16389473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 222 - 465
Target Start/End: Complemental strand, 44815690 - 44815447
Alignment:
Q  222 ccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctacagtgatcaccgtacaatctgcaaactcagccctaatggttt 321  Q
    |||||||| || | ||||||| | ||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| ||||| |||| |||||||||||    
T  44815690 ccatcactgattgaaagaaccttggtgcaatccatcacagttggtatcctatgagctactgtgattaccgtacaatcggcaaattcagtcctaatggttt 44815591  T
Q  322 tctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaatatcctactacgcctcaaaagtacacgccccaaacaaaataa 421  Q
    |||| | ||| |  ||||| | |||||||||||| ||||||||||| || | ||||||||  | ||| | |||||  |   |||| |||||||| |||||    
T  44815590 tctgtaaaatcaagtcagttgcattatcaattgatgcagttgcttcatcaagcaccaatactcgactcctcctcagcaaagcacggcccaaacagaataa 44815491  T
Q  422 ctgcctttgtcccatgctccaatttgatccatcttcaacaactg 465  Q
    ||||| ||||||||||||||||||||  ||||||||||| ||||    
T  44815490 ctgccgttgtcccatgctccaatttgccccatcttcaaccactg 44815447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University