View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-12 (Length: 484)
Name: NF4698-Insertion-12
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 82 - 393
Target Start/End: Original strand, 25086498 - 25086809
Alignment:
| Q |
82 |
aattaccaagagaaaacgtccaaccataattggtactagtttattaaaaaccaaatcnnnnnnnngaaaaaatattaagaaccaaatctattatcttcaa |
181 |
Q |
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| T |
25086498 |
aattaccaagagaaaacgtccaaccataattggtactagtttattaaaaaccaaatctttttttttttaaaatattaagaaccaaatctattatcttcaa |
25086597 |
T |
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| Q |
182 |
ttattatagttcagatcgataggattagtagtgctgagttgtcaagcaatnnnnnnntttgcaacttgtccttgtgaaattaaaataaagaatgatataa |
281 |
Q |
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| T |
25086598 |
ttattataattcagatcgataggattagtagtgctgagttgtcaagcaataaaaaaaattgcaacttgtccttgtgaaattaaaataaagaatgatataa |
25086697 |
T |
|
| Q |
282 |
gaataaggannnnnnnagtttgtaggcattaggcaaagtgagaaacacgaggtgtaattcacactcgtaactacaaggttctcaatttaaatttagacga |
381 |
Q |
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| T |
25086698 |
gaataaggatttttttagtttgtaggcattaggcaaagtgagaaacacgaggtgtaattcacactcgtaactacaaggttctcaatttaaatatagatca |
25086797 |
T |
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| Q |
382 |
tgtccaatttaa |
393 |
Q |
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| T |
25086798 |
tgtccaatttaa |
25086809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 25092010 - 25092144
Alignment:
| Q |
151 |
aaatattaagaaccaaatctattatcttcaattattatagttcagatcgataggattagtagtgctgagttgtcaagcaatnnnnnnntttgcaacttgt |
250 |
Q |
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| T |
25092010 |
aaatattaaaaacaaaatctattatctttaattattatagttcagattgatagggttagttatcatgagttgtcaagcaatacaaaaatttgcaacttct |
25092109 |
T |
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| Q |
251 |
cc-ttgtgaaattaaaataaagaatgatataagaa |
284 |
Q |
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| T |
25092110 |
cctttgtgaaattaaaataaagaatgatattagaa |
25092144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 25086424 - 25086467
Alignment:
| Q |
8 |
gacaattgagtgagggggatgaagactttatattcaggtagttg |
51 |
Q |
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| T |
25086424 |
gacaattgagtgagggggatgaagactttatattcaggtagttg |
25086467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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