View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-14 (Length: 326)
Name: NF4698-Insertion-14
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 16021530 - 16021631
Alignment:
| Q |
226 |
attcaacatcaaaactc-tagtttgaaattgtttatacaaatgataggtaatcaaatatatttccttacaccccaccttacatctcgaaagccacaaaat |
324 |
Q |
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| T |
16021530 |
attcaacatcaaaactcatagtttgacattgtttatacaaatgataggtaatcaaatatattcccctacaccccgccttacatctccaaagccacaaaat |
16021629 |
T |
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| Q |
325 |
ca |
326 |
Q |
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|| |
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| T |
16021630 |
ca |
16021631 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 16020729 - 16020808
Alignment:
| Q |
123 |
tttgtgttaagaaagtaaacaaggttaagaaagaaattagattagaggtcaagctcatagttatatccatcaaattctaa |
202 |
Q |
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| T |
16020729 |
tttgtgttaagaaagtaaacaaggttaagaaagacattagattagaggtcaagctcttagtcatatacatcaaattctaa |
16020808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 40822892 - 40822952
Alignment:
| Q |
98 |
atccagacatatataagaaactcattttgtgttaagaaagtaaacaaggttaagaaagaaatta |
161 |
Q |
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| T |
40822892 |
atccatacatatataagaaactcactt---gttaagaaagtaaacaaggataagaaagacatta |
40822952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 20290255 - 20290191
Alignment:
| Q |
94 |
taggatccagacatatataagaaactcattttgtgttaagaaagtaaacaaggttaagaaagaaatta |
161 |
Q |
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| T |
20290255 |
taggatccatacatatataagaaactcactt---gttaagaaagtaaacaatgttaagaaagacatta |
20290191 |
T |
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