View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-18 (Length: 75)
Name: NF4698-Insertion-18
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-18 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 619156 - 619222
Alignment:
| Q |
8 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaaattttaccctcccta |
74 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
619156 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaaattttaccctcccta |
619222 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 35408648 - 35408582
Alignment:
| Q |
8 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaaattttaccctcccta |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35408648 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaaattttaccctcccta |
35408582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-28
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 34588079 - 34588013
Alignment:
| Q |
8 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaaattttaccctcccta |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
34588079 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaatttttaccctcccta |
34588013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 25100030 - 25099966
Alignment:
| Q |
8 |
atgataacatgtaagatagaaatgtggtaaacaaaatattagaatcacaaaaattttaccctccc |
72 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||| |
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| T |
25100030 |
atgataacatgagagatagaaacgttgtaaacaaaatattagaatcacaaaaaatttaccctccc |
25099966 |
T |
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