View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-4 (Length: 900)
Name: NF4698-Insertion-4
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 743; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 8 - 871
Target Start/End: Complemental strand, 51501173 - 51500321
Alignment:
| Q |
8 |
gatgttcccaggaatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagata |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51501173 |
gatgttcccaggaatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagata |
51501074 |
T |
|
| Q |
108 |
tgattgtctgcaaggttgagcaccataagctgagtaagacgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttgga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51501073 |
tgattgtctgcaaggttgagcaccataagctgagtaagacgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttgga |
51500974 |
T |
|
| Q |
208 |
gaaaattgagagttgtgatgcatccaggg-atattccccgaaatgcccttccagtcggagacggtaatgctagagagccgtgttaggttgcaaattgatg |
306 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51500973 |
gaaaattgagagttgtgatgcatccaggggatattccccgaaatgcccttccagtcggagacggtaatgctagagagccgtgttaggttgcaaattgatg |
51500874 |
T |
|
| Q |
307 |
gggagatgtgtccggtcatgtatccatttttcgtggttttggtatatttgtagcggcgatggttgtcaccaacagtgaggccgcggagtgtgatttctgc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51500873 |
gggagatgtgtccggtcatgtatccatttttcgtggttttggtatatttgtagcggcgatggttgtcaccaacagtgaggccgcggagtgtgatttctgc |
51500774 |
T |
|
| Q |
407 |
gacacgatgtgtggtagggtcgcaactgattccgtaccaaccgtagcagcagttggtacctctccatgaatggaagattccaaagttaggttcgttgaga |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51500773 |
gacacgatgtgtggtagggtcgcaactgattccgtaccaaccgtagcaacagttggtacctctccatgaatggaagattccaaagttaggttcgttgaga |
51500674 |
T |
|
| Q |
507 |
gctgctttgaaaagacatgagtgatgcccattcagaagtagggcatgactcaataagagcttttgaggtaactaatactagtaatgaaattgtcaaaact |
606 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
51500673 |
gctgctttg-aaagacatgagtgatgcccattcagaagtagggcatgactcagtaagagcttctgaggtaactaatactagtaatgaaattgtcaaaact |
51500575 |
T |
|
| Q |
607 |
gctctagccccacacattattttcttaatttgggtttagtaatgatttgagtttcttgcatatatatttgaatgagtgtgcaactatgcaaatgccactt |
706 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51500574 |
gctctagcaccacacattattttcttaattt-ggtttagtaatgatttgagtttcttgcatatatatttgaatgagtgtgcaactatgcaaatgccactt |
51500476 |
T |
|
| Q |
707 |
actatttatatacgggaactagcaaaatagcaatagggttagtagtgtgtgtttcagtgtttgtaaagtgatgtatatggcttgtgatataaggattaat |
806 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51500475 |
actatttatatacgggaactagcaata---------ggttagtagtgtgtgtttcagtgtttgtaaagtgatgtatat-gcttgtgatataaggattaat |
51500386 |
T |
|
| Q |
807 |
gttagtatgggtttcttttaaaagcctatc-agtgcacgactctgttaac-agaaaggaattttgta |
871 |
Q |
| |
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|||||||||| |||| |||||||| ||||| |||||| |||||||||||| |||||||||||||||| |
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| T |
51500385 |
gttagtatggttttc-tttaaaag-ctatcaagtgcatgactctgttaacaagaaaggaattttgta |
51500321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 9 - 871
Target Start/End: Original strand, 24766421 - 24767280
Alignment:
| Q |
9 |
atgttcccaggaatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagatat |
108 |
Q |
| |
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|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24766421 |
atgttcccaggaatagggcctccaatagcattgttgtggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttccagagatat |
24766520 |
T |
|
| Q |
109 |
gattgtctgcaaggttgagcaccataagctgagtaagacgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttggag |
208 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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|
| T |
24766521 |
gattgtctgcaaggttgagcaccgtaagttgagtaagacgccctatatcatatggaatctttccggaaataacatttccagagagatctatgatttggag |
24766620 |
T |
|
| Q |
209 |
aaaattgagagttgtgatgcatccagggatattccccgaaatgcccttccagtcggagacggtaatgctagagagccgtgttaggttgcaaattgatggg |
308 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
24766621 |
aaaatcgagggttgtgatgcatccagggatatttcccgaaatacccttccaatcggagatggtaatgctagatagttgtgttaggttgcaaattgatggg |
24766720 |
T |
|
| Q |
309 |
gagatgtgtccggtcatgtatccatttttcgtggttttggtatatttgtagcggcgatggttgtcaccaacagtgaggccgcggagtgtgatttctgcga |
408 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24766721 |
gagatgtgtccggtcatgtatccact----gtggttttggagtgtttgtagcggcggtggttgtcaccaacagtgaggccgcggagtgtgatttctgcga |
24766816 |
T |
|
| Q |
409 |
cacgatgtgtggtagggtcgcaactgattccgtaccaaccgtagcagcagttggtacctctccatgaatggaagattccaaagttaggttcgttgagagc |
508 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24766817 |
tgcgatttgtggtagggtcgcagctgactccgtaacaatcgtagcaacagttggtacctctccatgaatggaaaactccaaagttaggttcgttgagagc |
24766916 |
T |
|
| Q |
509 |
tgctttgaaaagacatgagtgatgcccattcagaagtagggcatgactc------------aataagagcttttgaggtaactaatactagtaatgaaat |
596 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| || |
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| T |
24766917 |
tgctttg-aaggacatgagtgatgcccactcagaaggtgggcatgactcaacaggtaaaataataagagcttttaaggtaactaatactagtaatgagat |
24767015 |
T |
|
| Q |
597 |
tgtcaaaactgctctagccccacacattattttcttaatttgggtttagtaatgatttgagtttcttgcatatatatttgaatgagtgtgcaactatgca |
696 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||| |||||||||| |||||| |||||||||| || ||||||||||||||||||||||||| |
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|
| T |
24767016 |
tgtcaaagctgctctaggaccacacatttttttcttaattt-ggtttagtaactatttgactttcttgcatgtagatttgaatgagtgtgcaactatgca |
24767114 |
T |
|
| Q |
697 |
aatgccacttactatttatatacgggaactagcaaaatagcaatagggttagta--gtgtgtgtttcagtgtttgtaaagtgatgtatatggcttgtgat |
794 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24767115 |
aatgccacttactatttatataggggaactagcaata---------ggttagtagtgtgtgtgtttcagtgtttgtaaagtgatgtatat-acttgtgat |
24767204 |
T |
|
| Q |
795 |
ataaggattaatgttagtatgggtttcttttaaaagcctatcagtgcacgactctgttaac-agaaaggaattttgta |
871 |
Q |
| |
|
| ||||||||||||||||||| |||| || ||||| |||||| |||| | |||||||||| |||||||||||||||| |
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|
| T |
24767205 |
aaaaggattaatgttagtatgattttc-ttgaaaag-ctatcaatgcatggctctgttaacaagaaaggaattttgta |
24767280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 24751293 - 24751593
Alignment:
| Q |
20 |
aatggggcctccaatggcgttgttacggagatcaagttgcattaagttgaagaggtttacaagcgttgttggaatccttcctgagatatgattgtctgca |
119 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |
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| T |
24751293 |
aatggggcctccaatggtgttgttgcggagatcaagttgcattaagttgaagaggtttacaagtgtagttggaatccttcacgagatatgatt------- |
24751385 |
T |
|
| Q |
120 |
aggttgagcaccataagctgagtaagacgccctatatcatatggaatctttccggaaataagacttccggagagatctatgatttggagaaaattgagag |
219 |
Q |
| |
|
||||| |||||| ||||| |||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||| || |
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|
| T |
24751386 |
--------------aagctaagtaaggcgcccaatatcatatggaatctttgaggaaataaggtttttggagagatcgatgatttggagaaaattaaggt |
24751471 |
T |
|
| Q |
220 |
ttgtgatgcatccagggatattccccgaaatgcccttccagtcggagacggtaatgctaga----gagccgtgttaggttgcaaattgatggggagatgt |
315 |
Q |
| |
|
|| || ||| |||||||||| ||| |||| |||||||||| ||| | |||||||||||| ||| ||||||||||||||||||| |||||||||| |
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|
| T |
24751472 |
atgcgagacattcagggatatttcccaaaatccccttccagttggaaatggtaatgctagatagagagttgtgttaggttgcaaattgagggggagatgt |
24751571 |
T |
|
| Q |
316 |
gtccggtcatgtatccattttt |
337 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
24751572 |
gtccgttcatgtatccactttt |
24751593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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