View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4698-Insertion-5 (Length: 817)

Name: NF4698-Insertion-5
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4698-Insertion-5
NF4698-Insertion-5
[»] scaffold0044 (1 HSPs)
scaffold0044 (8-817)||(88323-89132)
[»] chr3 (27 HSPs)
chr3 (386-441)||(771952-772007)
chr3 (112-178)||(2679151-2679217)
chr3 (391-443)||(2474701-2474753)
chr3 (386-441)||(2455416-2455471)
chr3 (112-167)||(2687069-2687124)
chr3 (386-433)||(13497782-13497829)
chr3 (391-441)||(9595047-9595097)
chr3 (626-679)||(747332-747385)
chr3 (75-168)||(9585876-9585969)
chr3 (40-168)||(764299-764427)
chr3 (76-183)||(2697455-2697562)
chr3 (479-526)||(9562302-9562349)
chr3 (393-430)||(1898132-1898169)
chr3 (393-430)||(1907578-1907615)
chr3 (477-526)||(2501830-2501879)
chr3 (393-430)||(2931471-2931508)
chr3 (114-178)||(988688-988752)
chr3 (394-442)||(2491681-2491729)
chr3 (32-207)||(9595281-9595456)
chr3 (627-669)||(7443193-7443235)
chr3 (391-437)||(12217599-12217645)
chr3 (477-526)||(747476-747525)
chr3 (393-430)||(1941034-1941071)
chr3 (393-442)||(2476235-2476284)
chr3 (393-442)||(2630919-2630968)
chr3 (477-526)||(7334607-7334656)
chr3 (626-663)||(9562180-9562217)
[»] chr1 (1 HSPs)
chr1 (382-436)||(51858157-51858211)
[»] chr7 (1 HSPs)
chr7 (33-204)||(27754859-27755030)
[»] chr6 (6 HSPs)
chr6 (383-438)||(24417912-24417967)
chr6 (394-437)||(4183455-4183498)
chr6 (394-437)||(4744296-4744339)
chr6 (391-449)||(9820328-9820386)
chr6 (391-449)||(9825990-9826048)
chr6 (36-178)||(24418154-24418296)
[»] scaffold1004 (1 HSPs)
scaffold1004 (385-439)||(1721-1775)
[»] scaffold0760 (1 HSPs)
scaffold0760 (385-439)||(4216-4270)
[»] chr5 (10 HSPs)
chr5 (129-191)||(20305163-20305225)
chr5 (129-191)||(20309567-20309629)
chr5 (391-438)||(20292558-20292605)
chr5 (391-438)||(20301006-20301053)
chr5 (391-438)||(20305419-20305466)
chr5 (391-438)||(20309823-20309870)
chr5 (393-430)||(23754494-23754531)
chr5 (393-430)||(23774528-23774565)
chr5 (393-430)||(23819949-23819986)
chr5 (393-430)||(23861481-23861518)
[»] chr2 (1 HSPs)
chr2 (63-189)||(7169398-7169524)
[»] chr4 (2 HSPs)
chr4 (63-178)||(20020503-20020618)
chr4 (393-430)||(20020248-20020285)
[»] scaffold0015 (1 HSPs)
scaffold0015 (93-173)||(41103-41187)
[»] chr8 (1 HSPs)
chr8 (393-430)||(31144857-31144894)


Alignment Details
Target: scaffold0044 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 8 - 817
Target Start/End: Original strand, 88323 - 89132
Alignment:
Q  8 caccgaaaccctatcatcgtcgctgcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagt 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  88323 caccgaaaccctatcatcgtcgctgcttccaactcttccgttcgatgtgatctctgaaattctctgcaggcttccagtgaagcttctcctacaacttagt 88422  T
Q  108 tgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacctcta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88423 tgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacctcta 88522  T
Q  208 cagacgactcacatgagttggttctctttggttctccgatttcctccgttctgtcgatttctagggttacgcagacacaactcagttaccctagtagtct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88523 cagacgactcacatgagttggttctctttggttctccgatttcctccgttctgtcgatttctagggttacgcagacacaactcagttaccctagtagtct 88622  T
Q  308 cacatttgaatatggtgaacgttctgatgtgtgctcttgtgacggcatcttgtgtataaacgtctgctttcacccttctgctattttgtggaacccttcc 407  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88623 cacatttgaatatggtgaacgttctgatgtctgctcttgtgacggcatcttgtgtataaacgtctgctttcacccttctgctattttgtggaacccttcc 88722  T
Q  408 attcgaaaattcaaggtattgcctcctttggaaaaaattcaatgcaagagagttccgttttcaatatacagcttcggttatgatcatttcattgataatt 507  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88723 atccgaaaattcaaggtattgcctcctttggaaaaaattcaatgcaagagagttccgttttcaatatacagcttcggttatgatcatttcattgataatt 88822  T
Q  508 atgagatcattgttgtttcctcatgtatcaacaaaagtgaagtttgtattttaactttaggtactgattattggagaagaataaaagacttcccatatga 607  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88823 ataagatcatagttgtttcctcatgtatcaacaaaagtgaagtttgtattttaactttaggtactgattattggagaagaataaaagacttcccatatga 88922  T
Q  608 tggtcccttacatgaatcgggaatatttgtgagtggcactgttaattggctggcaatcgataactcaagttcaaatagttctctgcgagccattgtttca 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88923 tggtcccttacatgaatcgggaatatttgtgagtggcactgttaattggctggcaatcgataactcaagttcaaatagttctctgcgagccattgtttca 89022  T
Q  708 cttgatttggagaacgagtcatataaaaagcttccacatcctgatttggaaaacgagttgtggaccttgggggtgttaacggattgcttgtgcatcttta 807  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  89023 cttgatttggagaatgagtcgtataaaaagcttccacatcctgatttggaaaacgagttgtggaccttgggggtgttaacggattgcttgtgcatcttta 89122  T
Q  808 caagtagtga 817  Q
    ||||||||||    
T  89123 caagtagtga 89132  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 772007 - 771952
Alignment:
Q  386 tgctattttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaa 441  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  772007 tgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaa 771952  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 2679217 - 2679151
Alignment:
Q  112 tctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaac 178  Q
    |||||||||||||||||||||| |||||||||||||||||| | || ||||||||| || |||||||    
T  2679217 tctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagcgtgtcaac 2679151  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 2474701 - 2474753
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaaaa 443  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  2474701 ttttgtggaacccttccattggaaaatttaagttattgcctcctttggaaaaa 2474753  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 2455416 - 2455471
Alignment:
Q  386 tgctattttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaa 441  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  2455416 tgctgttttgtggaacccttccattggagaattcaagatattgcctcctttggaaa 2455471  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 2687124 - 2687069
Alignment:
Q  112 tctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcacctt 167  Q
    |||||||||||||||||||||| |||||||||||||||||| | || |||||||||    
T  2687124 tctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcacctt 2687069  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 13497782 - 13497829
Alignment:
Q  386 tgctattttgtggaacccttccattcgaaaattcaaggtattgcctcc 433  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  13497782 tgctattttgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 9595097 - 9595047
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaa 441  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  9595097 ttttgtggaacccttccattagaaaatttaagttattgcctcctttggaaa 9595047  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 626 - 679
Target Start/End: Complemental strand, 747385 - 747332
Alignment:
Q  626 gggaatatttgtgagtggcactgttaattggctggcaatcgataactcaagttc 679  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| | ||||||||    
T  747385 gggaatatttgtgagtgacactgttaattggttggcaatcgatgaatcaagttc 747332  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 9585969 - 9585876
Alignment:
Q  75 aggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttc 168  Q
    |||||||| |||||||| ||||| ||||||   |||||| |||| || | ||||||||||||||||||||| ||||| ||||| ||||| ||||    
T  9585969 aggcttccggtgaagctcctccttcaacttcagtgcctcggcaaatcgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttc 9585876  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 764427 - 764299
Alignment:
Q  40 ctcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctc 139  Q
    ||||||| |||||| || |  |||| ||| |||| ||||||||||||||||| ||||| ||||||   |||||| | || |  |||||||||||||| ||    
T  764427 ctcttcccttcgatctggttgctgagattttctgtaggcttccagtgaagctcctccttcaacttcagtgcctcggaaaattgtggaaatctctaatttc 764328  T
Q  140 cgatccaaaatttacaaaaaagcaccttc 168  Q
    |||||| ||||| ||||| ||||| ||||    
T  764327 cgatcctaaattcacaaagaagcatcttc 764299  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 2697562 - 2697455
Alignment:
Q  76 ggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtc 175  Q
    |||| ||||||||| | |||||||||||| | ||| |||| ||||||||||| ||||||||| | ||| | |  ||||| || ||||||||| |||||||    
T  2697562 ggctcccagtgaagttactcctacaacttcgatgcgtctgtaagtcatggaattctctaatcactgataccagttttaccaagaagcaccttagcatgtc 2697463  T
Q  176 aacaacgc 183  Q
    ||| ||||    
T  2697462 aaccacgc 2697455  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 479 - 526
Target Start/End: Complemental strand, 9562349 - 9562302
Alignment:
Q  479 cttcggttatgatcatttcattgataattatgagatcattgttgtttc 526  Q
    |||||| |||||||||||||||||||||||| || |||||||||||||    
T  9562349 cttcgggtatgatcatttcattgataattataaggtcattgttgtttc 9562302  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 1898169 - 1898132
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1898169 ttgtggaacccttccattcgaaaattcaaggaattgcc 1898132  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 1907615 - 1907578
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1907615 ttgtggaacccttccattcgaaaattcaaggaattgcc 1907578  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 2501830 - 2501879
Alignment:
Q  477 agcttcggttatgatcatttcattgataattatgagatcattgttgtttc 526  Q
    ||||| || |||||||||||||||||||||||| || |||||||||||||    
T  2501830 agctttggatatgatcatttcattgataattataaggtcattgttgtttc 2501879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 2931471 - 2931508
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  2931471 ttgtggaacccttccattcgaaaattcaaggaattgcc 2931508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 988688 - 988752
Alignment:
Q  114 tgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaac 178  Q
    |||||||||||||| ||| ||||||| ||||| |||||  |||||||||||||| || |||||||    
T  988688 tgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaac 988752  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 2491681 - 2491729
Alignment:
Q  394 tgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaaa 442  Q
    ||||||||||||||||| |||| || ||| |||||||||||||||||||    
T  2491681 tgtggaacccttccattagaaagtttaagttattgcctcctttggaaaa 2491729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 9595456 - 9595281
Alignment:
Q  32 gcttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatct 131  Q
    ||||||||||||||| |||||| | ||  |||||||||| ||||||||||| |||||| | ||| | |||||| | ||| | || ||||  |   | |||    
T  9595456 gcttccaactcttcctttcgatctaattgctgaaattctatgcaggcttcctgtgaagtttctctttcaacttcgatgcgtatgtaagttctttcattct 9595357  T
Q  132 ctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacctcta 207  Q
    || || || |||||||||||| |||| || |||||||   ||||||||| || ||||||| ||||| || ||||||    
T  9595356 cttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatgatagcctcta 9595281  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 669
Target Start/End: Complemental strand, 7443235 - 7443193
Alignment:
Q  627 ggaatatttgtgagtggcactgttaattggctggcaatcgata 669  Q
    |||||||||||| ||||||||||||||||| |||||| |||||    
T  7443235 ggaatatttgtgggtggcactgttaattggatggcaagcgata 7443193  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 12217599 - 12217645
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttg 437  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||    
T  12217599 ttttgtggaacccttccattcgaatgttcaagatattgcctactttg 12217645  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 747525 - 747476
Alignment:
Q  477 agcttcggttatgatcatttcattgataattatgagatcattgttgtttc 526  Q
    ||||| || |||||||||||||||||||||||| || || ||||||||||    
T  747525 agctttggatatgatcatttcattgataattataaggtcgttgttgtttc 747476  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 1941071 - 1941034
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1941071 ttgtggaacccttccattagaaaattcaaggaattgcc 1941034  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 2476235 - 2476284
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaaa 442  Q
    |||||||||||||||||| |||||||  || |||||||||||||| ||||    
T  2476235 ttgtggaacccttccattagaaaatttcagctattgcctcctttgaaaaa 2476284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 2630919 - 2630968
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaaa 442  Q
    |||||||||||||||||| |||| || ||| |||||||||| ||||||||    
T  2630919 ttgtggaacccttccattagaaagtttaagttattgcctccattggaaaa 2630968  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 7334656 - 7334607
Alignment:
Q  477 agcttcggttatgatcatttcattgataattatgagatcattgttgtttc 526  Q
    |||||||| |||||||||||||||||||||||| || || ||| ||||||    
T  7334656 agcttcggatatgatcatttcattgataattataaggtcgttgctgtttc 7334607  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 9562217 - 9562180
Alignment:
Q  626 gggaatatttgtgagtggcactgttaattggctggcaa 663  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  9562217 gggagtatttgtgagtggcactgttaattggttggcaa 9562180  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 51858157 - 51858211
Alignment:
Q  382 cttctgctattttgtggaacccttccattcgaaaattcaaggtattgcctccttt 436  Q
    |||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||    
T  51858157 cttctgctcttttgtgtaacccttccattagaaaattcaagatattgcctccttt 51858211  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 27754859 - 27755030
Alignment:
Q  33 cttccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctc 132  Q
    ||||| |||||| |||||||| | |||   || ||||| |||| |||||| |||||| | || || |||||| | |||||||| ||||| |  || |||     
T  27754859 cttcccactcttacattcgatctcatcgaagagattctgtgcatgcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaattctt 27754958  T
Q  133 taatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccacatcatggtaacct 204  Q
    |||||||||||||||||||| | || || ||||||||| ||||||| || | |||| |  ||||||||||||    
T  27754959 taatctccgatccaaaatttgccaagaaacaccttcgcttgtcaaccacccgccacaatctcatggtaacct 27755030  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 24417967 - 24417912
Alignment:
Q  383 ttctgctattttgtggaacccttccattcgaaaattcaaggtattgcctcctttgg 438  Q
    |||||||||||||||||||||||| ||| ||| ||||||| | |||||||||||||    
T  24417967 ttctgctattttgtggaacccttcgattagaacattcaagatcttgcctcctttgg 24417912  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 4183498 - 4183455
Alignment:
Q  394 tgtggaacccttccattcgaaaattcaaggtattgcctcctttg 437  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||    
T  4183498 tgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4183455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 4744339 - 4744296
Alignment:
Q  394 tgtggaacccttccattcgaaaattcaaggtattgcctcctttg 437  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||    
T  4744339 tgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4744296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 9820386 - 9820328
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaaaaattcaa 449  Q
    |||||||||||||||||||| ||||||  ||  ||||||||||||||||| ||| ||||    
T  9820386 ttttgtggaacccttccattagaaaatataacatattgcctcctttggaagaaaatcaa 9820328  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 9826048 - 9825990
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttggaaaaaattcaa 449  Q
    |||||||||||||||||||||||||||  ||  ||||||| ||||||||| ||| ||||    
T  9826048 ttttgtggaacccttccattcgaaaatataacatattgccccctttggaagaaaatcaa 9825990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 24418296 - 24418154
Alignment:
Q  36 ccaactcttccattcgatgtgatctctgaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaa 135  Q
    ||||||||||| |||||| |  |  |||| ||||| || |||||||| |||||| | ||||| |||||| | || ||||||||||| |  || ||  |||    
T  24418296 ccaactcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaa 24418197  T
Q  136 tctccgatccaaaatttacaaaaaagcaccttcgcatgtcaac 178  Q
    |||| ||||| |||||  |||| |||||||||||| |||||||    
T  24418196 tctctgatcccaaattcgcaaacaagcaccttcgcttgtcaac 24418154  T

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Target: scaffold1004 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 1721 - 1775
Alignment:
Q  385 ctgctattttgtggaacccttccattcgaaaattcaaggtattgcctcctttgga 439  Q
    ||||| |||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  1721 ctgctgttttgtggaacccttccattagaacattcaagattttgcctcctttgga 1775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 4216 - 4270
Alignment:
Q  385 ctgctattttgtggaacccttccattcgaaaattcaaggtattgcctcctttgga 439  Q
    ||||| |||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  4216 ctgctgttttgtggaacccttccattagaacattcaagattttgcctcctttgga 4270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 20305163 - 20305225
Alignment:
Q  129 tctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccac 191  Q
    ||||||||| ||||||| |||||  | || |||||||||||| ||||||||||||||||||||    
T  20305163 tctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaacaacgctccaccac 20305225  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 20309567 - 20309629
Alignment:
Q  129 tctctaatctccgatccaaaatttacaaaaaagcaccttcgcatgtcaacaacgctccaccac 191  Q
    ||||||||| ||||||| |||||  | || |||||||||||| ||||||||||||||||||||    
T  20309567 tctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaacaacgctccaccac 20309629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 20292558 - 20292605
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttgg 438  Q
    |||||||||||||||||||| |||||||||||  | ||||||||||||    
T  20292558 ttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20292605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 20301006 - 20301053
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttgg 438  Q
    |||||||||||||||||||| |||||||||||  | ||||||||||||    
T  20301006 ttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20301053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 20305419 - 20305466
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttgg 438  Q
    |||||||||||||||||||| |||||||||||  | ||||||||||||    
T  20305419 ttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20305466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 20309823 - 20309870
Alignment:
Q  391 ttttgtggaacccttccattcgaaaattcaaggtattgcctcctttgg 438  Q
    |||||||||||||||||||| |||||||||||  | ||||||||||||    
T  20309823 ttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20309870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 23754531 - 23754494
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  23754531 ttgtggaacccttccattagaaaattcaaggaattgcc 23754494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 23774565 - 23774528
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  23774565 ttgtggaacccttccattagaaaattcaaggaattgcc 23774528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 23819986 - 23819949
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  23819986 ttgtggaacccttccattagaaaattcaaggaattgcc 23819949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 23861518 - 23861481
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  23861518 ttgtggaacccttccattagaaaattcaaggaattgcc 23861481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 7169524 - 7169398
Alignment:
Q  63 gaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagc 162  Q
    |||||||||| |||||||||||| ||| | ||| | |||||    | | |||| ||||| ||||||||||| ||||||||| |||||||  | || || |    
T  7169524 gaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgctaagaatc 7169425  T
Q  163 accttcgcatgtcaacaacgctccacc 189  Q
    |||||||| ||||||| ||||||||||    
T  7169424 accttcgcttgtcaaccacgctccacc 7169398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 20020618 - 20020503
Alignment:
Q  63 gaaattctctgcaggcttccagtgaagctgctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagc 162  Q
    |||||||| || ||| | ||||||||||| ||||| |||||| | ||  | || || |||||||| ||||| |||||  |||| |||||| | || ||||    
T  20020618 gaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaattctctcatctctcatcctaaattttccaagaagc 20020519  T
Q  163 accttcgcatgtcaac 178  Q
    ||||||||||||||||    
T  20020518 accttcgcatgtcaac 20020503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 20020285 - 20020248
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  20020285 ttgtggaacccttccattagaaaattcaaggaattgcc 20020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 41187 - 41103
Alignment:
Q  93 ctcctacaacttagttgcctctgcaagtcatggaaatctctaatctc---cgatccaaaattta-caaaaaagcaccttcgcatg 173  Q
    ||||||||| |  ||||| |||||||||||||||| |||||||||||    ||||| ||||||| ||||||| ||||||||||||    
T  41187 ctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatgatcctaaatttatcaaaaaaacaccttcgcatg 41103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 31144894 - 31144857
Alignment:
Q  393 ttgtggaacccttccattcgaaaattcaaggtattgcc 430  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  31144894 ttgtggaacccttccattagaaaattcaaggaattgcc 31144857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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