View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-6 (Length: 790)
Name: NF4698-Insertion-6
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-6 |
 | |
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| [»] scaffold0913 (1 HSPs) |
| | |
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| [»] scaffold0898 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 43877024 - 43876322
Alignment:
| Q |
8 |
cgatcgatgtttagctgaaaatattcataaagaagattaattcaaattcaacacataaatgaataacatgcaaattacaaagagagtttaagtccaatga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43877024 |
cgatcgatgtttagctgaaaatattcataaagaagattaattcaaattcaacacataaatgaataacatgcaaattacaaagagagtttaagtccaatga |
43876925 |
T |
|
| Q |
108 |
tctccataccttccacctcacattgagtgtttactacatgcccaactctatcaattccattgaaaatgtcctttggactacccaattctctgggtactgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876924 |
tctccataccttccacctcacattgagtgtttactacatgcccaactctatcaattccattgaaaatgtcctttggactacccaattctctgggtactgt |
43876825 |
T |
|
| Q |
208 |
aatctttataccagatgggggattcattactaggttcctagtgggacaagcaacctaagatttccacaaagatacatttcaaagaaattccctttgtgtc |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876824 |
aatctttataccagatgggggattcattactaggttcctagtgggacaagcaacctaagatttccacaaagatacatttcaaagaaattccctttgtgtc |
43876725 |
T |
|
| Q |
308 |
atatcacccaaagaactcttcaaagcctgaaattcatatcaattcacggtactctgaatcagtttcttcaattgcgtatgttcaaactatgctacacaac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
43876724 |
atatcacccaaagaactcttcaaagcctgaaattcatatcaattcacggtactctgaatcagtttcttcaattgtgtatgttcaaactatgctacgcaac |
43876625 |
T |
|
| Q |
408 |
agttagaagccctatttgacaacactctgtactaaatagcgtatcataaaacaatatcgactaggtcaggtcaaaatccgctacgctataaccgctattc |
507 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
43876624 |
agttagaagccctatttgacaacactctgtactaaatagcgtatcataaaacaatatcgactag-----gtcaaaatccgctacgctataactgctattc |
43876530 |
T |
|
| Q |
508 |
gacagtactcataatcatcaacatgcagttaccaccaacaaaaacnnnnnnnnnnaatctcaattcctttcattggttaaagaagccatctatgtcagat |
607 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43876529 |
gacagtactcataatcaccaacatgcagttaccaccaacaaaaac-tttttttttaatctcaattcctttcattggttaaagaagccatccatgtcagat |
43876431 |
T |
|
| Q |
608 |
tagcaagtaaggaaggactagatagctaaagaagattaaacaaagaacccttaagaacagaaaatgtacaatttttgtatagtaacgtaattgatcaatg |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43876430 |
tagcaagtaaggaaggactagatagctaaagaagattaaacaaagaacccttaagaacagaaaatgtacaatttttgtattgtaacgtaattgatcaatg |
43876331 |
T |
|
| Q |
708 |
ttttgtgac |
716 |
Q |
| |
|
||||||||| |
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|
| T |
43876330 |
ttttgtgac |
43876322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 790
Target Start/End: Complemental strand, 43876280 - 43876248
Alignment:
| Q |
758 |
gggtcatagaaatttccggggtaaagaggacta |
790 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
43876280 |
gggtcatagaaatttccggggtaaagaggacta |
43876248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 12132091 - 12132129
Alignment:
| Q |
425 |
gacaacactctgtactaaatagcgtatcataaaacaata |
463 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
12132091 |
gacaacactttgtactaaatagcgtatcataaaacaata |
12132129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 26373143 - 26373099
Alignment:
| Q |
419 |
ctatttgacaacactctgtactaaatagcgtatcataaaacaata |
463 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
26373143 |
ctatttgacaacactttgtactaaatagcgtatcacagaacaata |
26373099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 1279 - 1329
Alignment:
| Q |
419 |
ctatttgacaacactctgtactaaatagcgtatcataaaacaatatcgact |
469 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
1279 |
ctatttgacaacactttgtactaaatagtgtatcacggaacaatatcgact |
1329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 4322 - 4272
Alignment:
| Q |
419 |
ctatttgacaacactctgtactaaatagcgtatcataaaacaatatcgact |
469 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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|
| T |
4322 |
ctatttgacaacactttgtactaaatagtgtatcacggaacaatatcgact |
4272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 7245950 - 7245983
Alignment:
| Q |
419 |
ctatttgacaacactctgtactaaatagcgtatc |
452 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
7245950 |
ctatttgacaacactttgtactaaatagcgtatc |
7245983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 51616393 - 51616426
Alignment:
| Q |
419 |
ctatttgacaacactctgtactaaatagcgtatc |
452 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
51616393 |
ctatttgacaacactctgtattaaatagcgtatc |
51616426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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