View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698-Insertion-7 (Length: 741)
Name: NF4698-Insertion-7
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 25 - 727
Target Start/End: Complemental strand, 11183696 - 11183029
Alignment:
| Q |
25 |
agctactactcaaacctaaggattcaaaagggcttgtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagct |
124 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
11183696 |
agctactactcaaacctaaggattcaaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccattgccattgttaatagct |
11183597 |
T |
|
| Q |
125 |
ttagcagcaatcaaactcttttctttgaagcttttaaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11183596 |
ttagcagcaatcaaactcttttctttgaagcttttaaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaac |
11183497 |
T |
|
| Q |
225 |
acactgtaactttgttaatactgttagtcttgctaccaaagtcaccaaagattcatcagaagatggtattgttagctcataccaagtaatttaatacaag |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11183496 |
acactgtaactttgttaatactgttagtcttgctaccaaagtcaccaaagattcagcagaagatggtattgttagctcataccaagtaatttaatacaag |
11183397 |
T |
|
| Q |
325 |
ttgcataagaaaggtacctacgtacctataataaagagtgtgttctaggggaacatacatgggcccttctcttgtgctggatatggtgatatattttgta |
424 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |
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| T |
11183396 |
ttgcataagaaaggtacctacctacctataataaagagtgtgttctaggggaacatacatgggctcttctcttgtgctgg--atggtgaaat-------- |
11183307 |
T |
|
| Q |
425 |
atatatggctattgaatgcagtgtgtttgtaagatctatttttgtaatctatggctattgataattatatgtcatcatattaataaaactaagtatcttt |
524 |
Q |
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| T |
11183306 |
------------tgaatgcagtgtgtttgtaagatcta-ttttgtaatctatggctattgataattatatgtcatcatattaataaaactaagtatcttt |
11183220 |
T |
|
| Q |
525 |
catttcttgtagtaactcttagatgagatatcatcagtttttactttcttgttcttttct---tttgtgcattcacggggttgtgtcagaaatgttatta |
621 |
Q |
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| T |
11183219 |
catat-ttcttgtaactcttagatgagatatcatcagtttttactttcttgttcttttctttatttgtgcattcacggggttgtgtcagaaatgttatta |
11183121 |
T |
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| Q |
622 |
ttttcgtggagtatatacaagggactaggttcaaatcttgtcccctattctagattcaaatcttctattgtactcatcaaaacttgatttttattcaagt |
721 |
Q |
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| T |
11183120 |
ttttcgt--------------ggactaggttcaaatcttgtcccctattctagattcaaatcttctatcgtactcatcaaaacttgatttttattcaagt |
11183035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 58 - 345
Target Start/End: Complemental strand, 11190887 - 11190600
Alignment:
| Q |
58 |
ttgtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagctt |
157 |
Q |
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|||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11190887 |
ttgtttcagagtgatcaagagcttttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagctt |
11190788 |
T |
|
| Q |
158 |
ttaaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgc |
257 |
Q |
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| T |
11190787 |
ttaaggcctccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaactttgttaatactgttagtcttgc |
11190688 |
T |
|
| Q |
258 |
taccaaagtcaccaaagattcatcagaagatggtattgttagctcataccaagtaatttaatacaagttgcataagaaaggtacctac |
345 |
Q |
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| T |
11190687 |
taccaaagtcaccaaagattcatcagaagatggtattgttagctcattctaagtaatttaagacaagttgcataagaaaggtatctac |
11190600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 11172846 - 11173185
Alignment:
| Q |
8 |
cagatacattcgactcgagctactactcaaacctaaggattcaaaagggcttgtttcagagtgaccaagaattgttttccacaactggtgctgataccat |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||| || || || || |
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| T |
11172846 |
cagatacattcgactcggcctactactcaaacctaaggattcaaaaaggcttgtttcagagtgaccaagtattgtcttccacaagtggcgcggacacgat |
11172945 |
T |
|
| Q |
108 |
tgccattgtcaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcctcgatgattaagatgggtaatattggagtgttaactggaact |
207 |
Q |
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| T |
11172946 |
tgccattgtcaacagtttcaacaacaaccaaactcttttctttgaagcttttaaggcctcgatgattaaaatgagtagaattaaagtgttaactggatct |
11173045 |
T |
|
| Q |
208 |
caaggtgaagttagaacacactgtaactttgttaat---actgttagtcttgctaccaaagtcaccaaagattcatcagaagatggtattgttagctcat |
304 |
Q |
| |
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||||||||| |||||| ||| ||||||||||||||| | | | | ||||| || |||||||| | ||| || ||||| ||||||||||||||||||| |
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| T |
11173046 |
caaggtgaaattagaaaacaatgtaactttgttaatggaaattctggccttgccacaaaagtcacaagagagtcgtcagaggatggtattgttagctcat |
11173145 |
T |
|
| Q |
305 |
accaagtaatttaatacaagttgcataagaaaggtaccta |
344 |
Q |
| |
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| T |
11173146 |
actaagtaatttaatacaagttgcataagaaaggtaccta |
11173185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 11178995 - 11179173
Alignment:
| Q |
55 |
ggcttgtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaag |
154 |
Q |
| |
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||||||||||| ||||||||||| | |||||||||| |||| |||| || ||| | ||||||||||| || || ||||||||||| ||||||||| |
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| T |
11178995 |
ggcttgtttcaaagtgaccaagagcttttttccacaaatggttctgacactatttctattgtcaatagtttcgccaataatcaaactctcttctttgaaa |
11179094 |
T |
|
| Q |
155 |
cttttaaggcctcgatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaa |
233 |
Q |
| |
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|||| || || ||||| || ||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||| |
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| T |
11179095 |
attttgttgcttcaatgataaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaa |
11179173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 11190527 - 11190478
Alignment:
| Q |
416 |
tattttgtaatatatggctattgaatgcagtgtgtttgtaagatctattt |
465 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
11190527 |
tattttgtaatctatggctactgaatgcagtgtgtttgtaagttctattt |
11190478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 11097927 - 11098016
Alignment:
| Q |
100 |
gataccattgccattgtcaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcctcgatgattaagatgggtaatatt |
189 |
Q |
| |
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||||||||||| ||||| ||||||||||| ||||| ||| |||| |||||||| ||||| || || |||||||| |||| ||||||| |
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| T |
11097927 |
gataccattgctattgttaatagctttagtagcaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggctaatatt |
11098016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11119168 - 11119237
Alignment:
| Q |
50 |
aaaagggcttgtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaa |
119 |
Q |
| |
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||||||| ||| |||| ||||||||||||||||| || ||| | ||||| ||||||||| ||||||||| |
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| T |
11119168 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaa |
11119237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 11137707 - 11137776
Alignment:
| Q |
50 |
aaaagggcttgtttcagagtgaccaagaattgttttccacaactggtgctgataccattgccattgtcaa |
119 |
Q |
| |
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||||||| ||| |||||||||||||||| | || || ||| ||||||||||||||||| ||||||||| |
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| T |
11137707 |
aaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtgctgataccattagcattgtcaa |
11137776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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