View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4698-Insertion-9 (Length: 650)

Name: NF4698-Insertion-9
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4698-Insertion-9
NF4698-Insertion-9
[»] chr3 (29 HSPs)
chr3 (10-650)||(350670-351307)
chr3 (416-574)||(662617-662774)
chr3 (416-601)||(34250381-34250566)
chr3 (418-545)||(45443171-45443299)
chr3 (418-543)||(44573217-44573343)
chr3 (418-543)||(54368930-54369056)
chr3 (415-538)||(24860152-24860276)
chr3 (418-543)||(14170086-14170212)
chr3 (418-543)||(27219220-27219346)
chr3 (418-543)||(41380615-41380741)
chr3 (418-545)||(13769376-13769504)
chr3 (416-543)||(34715542-34715670)
chr3 (417-543)||(4255400-4255527)
chr3 (418-543)||(4256125-4256251)
chr3 (462-592)||(35035036-35035166)
chr3 (448-583)||(31603899-31604034)
chr3 (449-543)||(43101458-43101553)
chr3 (418-536)||(44573846-44573965)
chr3 (451-554)||(39225101-39225208)
chr3 (438-543)||(50203944-50204050)
chr3 (448-610)||(54861447-54861609)
chr3 (448-588)||(25568419-25568559)
chr3 (418-543)||(44573533-44573656)
chr3 (465-543)||(3985712-3985790)
chr3 (490-589)||(45016874-45016973)
chr3 (453-543)||(47833749-47833839)
chr3 (418-543)||(48685404-48685531)
chr3 (173-243)||(17105251-17105321)
chr3 (500-610)||(31606405-31606515)
[»] chr5 (26 HSPs)
chr5 (421-601)||(4796253-4796433)
chr5 (417-593)||(31973471-31973647)
chr5 (427-601)||(16275143-16275316)
chr5 (417-543)||(28010203-28010330)
chr5 (418-543)||(13843588-13843714)
chr5 (418-601)||(904782-904970)
chr5 (418-543)||(37995721-37995847)
chr5 (460-593)||(15844262-15844394)
chr5 (416-542)||(24918053-24918180)
chr5 (418-543)||(13843904-13844030)
chr5 (418-543)||(27760282-27760408)
chr5 (484-584)||(30587832-30587932)
chr5 (427-541)||(20811354-20811469)
chr5 (427-541)||(20837709-20837824)
chr5 (418-545)||(31973210-31973337)
chr5 (461-543)||(873783-873865)
chr5 (419-543)||(27759967-27760092)
chr5 (416-542)||(24993961-24994088)
chr5 (418-543)||(1028180-1028305)
chr5 (418-543)||(28009884-28010010)
chr5 (534-603)||(38603939-38604007)
chr5 (461-543)||(17016180-17016262)
chr5 (417-497)||(12595236-12595317)
chr5 (418-543)||(38131658-38131781)
chr5 (417-514)||(17435354-17435452)
chr5 (418-474)||(30587959-30588015)
[»] chr1 (37 HSPs)
chr1 (418-592)||(51515606-51515781)
chr1 (418-575)||(6868025-6868182)
chr1 (418-543)||(31305602-31305728)
chr1 (431-601)||(34626803-34626973)
chr1 (418-610)||(41590249-41590439)
chr1 (418-543)||(33879865-33879991)
chr1 (418-543)||(33964264-33964390)
chr1 (448-599)||(12581374-12581526)
chr1 (418-541)||(45264554-45264678)
chr1 (418-543)||(2697418-2697544)
chr1 (418-543)||(17419678-17419804)
chr1 (492-554)||(51188890-51188952)
chr1 (448-580)||(7907894-7908027)
chr1 (418-554)||(5087834-5087970)
chr1 (417-545)||(13978476-13978604)
chr1 (417-601)||(40566295-40566478)
chr1 (448-591)||(19811050-19811193)
chr1 (417-543)||(20735412-20735539)
chr1 (418-543)||(4022212-4022338)
chr1 (444-586)||(19810742-19810883)
chr1 (418-543)||(19937130-19937256)
chr1 (463-542)||(19459660-19459739)
chr1 (418-543)||(35926309-35926434)
chr1 (418-514)||(8520351-8520448)
chr1 (485-578)||(13653327-13653420)
chr1 (418-579)||(18998603-18998764)
chr1 (448-543)||(8520180-8520276)
chr1 (448-556)||(33248404-33248512)
chr1 (448-556)||(33268576-33268684)
chr1 (448-602)||(12410327-12410482)
chr1 (444-514)||(14623125-14623195)
chr1 (417-537)||(15013415-15013536)
chr1 (420-601)||(7465371-7465555)
chr1 (500-601)||(41590568-41590662)
chr1 (479-543)||(43423232-43423296)
chr1 (503-601)||(18998370-18998468)
chr1 (522-601)||(17557752-17557829)
[»] chr8 (27 HSPs)
chr8 (438-610)||(39590611-39590781)
chr8 (446-601)||(30590368-30590523)
chr8 (418-579)||(38886993-38887154)
chr8 (418-554)||(28488408-28488544)
chr8 (418-543)||(31766892-31767018)
chr8 (417-543)||(18905746-18905873)
chr8 (417-543)||(23027915-23028042)
chr8 (418-543)||(23027592-23027718)
chr8 (448-577)||(26639033-26639162)
chr8 (417-545)||(36997056-36997185)
chr8 (438-586)||(34529899-34530047)
chr8 (416-529)||(3184004-3184118)
chr8 (417-543)||(21653216-21653344)
chr8 (470-577)||(26642531-26642638)
chr8 (418-559)||(25971317-25971459)
chr8 (461-559)||(44933152-44933250)
chr8 (416-544)||(20298602-20298731)
chr8 (501-589)||(30602874-30602960)
chr8 (416-543)||(21085235-21085363)
chr8 (430-545)||(15156986-15157101)
chr8 (417-509)||(32931296-32931389)
chr8 (428-543)||(40754345-40754462)
chr8 (417-543)||(22277414-22277541)
chr8 (448-543)||(21653724-21653821)
chr8 (478-601)||(16956584-16956707)
chr8 (485-538)||(18900826-18900879)
chr8 (418-483)||(34248276-34248341)
[»] chr2 (29 HSPs)
chr2 (417-601)||(18183357-18183541)
chr2 (420-554)||(26760902-26761036)
chr2 (418-543)||(43169133-43169259)
chr2 (418-544)||(21214287-21214414)
chr2 (418-543)||(43195675-43195801)
chr2 (418-545)||(21213970-21214098)
chr2 (460-543)||(15820188-15820271)
chr2 (416-543)||(3977090-3977218)
chr2 (416-543)||(5424843-5424971)
chr2 (416-543)||(17508998-17509126)
chr2 (417-543)||(25441586-25441713)
chr2 (416-543)||(42768419-42768547)
chr2 (427-543)||(18901951-18902068)
chr2 (417-543)||(30166166-30166293)
chr2 (531-601)||(36901147-36901217)
chr2 (448-543)||(3976242-3976338)
chr2 (479-543)||(3976558-3976622)
chr2 (420-554)||(3003983-3004118)
chr2 (456-539)||(39583430-39583513)
chr2 (417-514)||(10849607-10849705)
chr2 (461-543)||(23054261-23054343)
chr2 (417-543)||(7877734-7877861)
chr2 (491-601)||(14407953-14408064)
chr2 (448-593)||(5511839-5511983)
chr2 (457-580)||(21373914-21374046)
chr2 (480-554)||(11339772-11339846)
chr2 (485-551)||(14522459-14522525)
chr2 (524-610)||(21374232-21374318)
chr2 (501-545)||(35872850-35872894)
[»] chr7 (39 HSPs)
chr7 (416-554)||(3973050-3973188)
chr7 (478-601)||(32000769-32000892)
chr7 (417-602)||(30610837-30611019)
chr7 (418-543)||(257354-257480)
chr7 (438-579)||(12840623-12840764)
chr7 (433-598)||(16015441-16015606)
chr7 (448-601)||(41709940-41710093)
chr7 (416-540)||(43167983-43168108)
chr7 (416-543)||(1663692-1663819)
chr7 (418-582)||(23721035-23721199)
chr7 (421-591)||(28358978-28359149)
chr7 (417-543)||(28909922-28910049)
chr7 (420-554)||(12305132-12305266)
chr7 (457-598)||(422693-422834)
chr7 (418-579)||(41389199-41389359)
chr7 (458-601)||(30899019-30899152)
chr7 (456-590)||(39079981-39080115)
chr7 (433-598)||(14595913-14596078)
chr7 (418-513)||(40122043-40122139)
chr7 (479-610)||(10406606-10406737)
chr7 (418-543)||(40121705-40121831)
chr7 (456-546)||(41387460-41387550)
chr7 (418-543)||(41670759-41670885)
chr7 (418-543)||(1661278-1661404)
chr7 (415-601)||(25589100-25589285)
chr7 (416-543)||(7135330-7135458)
chr7 (463-539)||(10193467-10193543)
chr7 (420-510)||(29780352-29780443)
chr7 (451-593)||(46870238-46870381)
chr7 (459-601)||(16015749-16015891)
chr7 (418-474)||(37272176-37272232)
chr7 (444-601)||(14596221-14596378)
chr7 (430-535)||(39079724-39079829)
chr7 (471-543)||(29780092-29780164)
chr7 (448-543)||(41670505-41670600)
chr7 (448-554)||(14092259-14092366)
chr7 (448-554)||(14402277-14402384)
chr7 (501-543)||(8585066-8585108)
chr7 (418-534)||(30296520-30296637)
[»] chr4 (39 HSPs)
chr4 (418-543)||(53738295-53738421)
chr4 (416-543)||(50857901-50858029)
chr4 (444-598)||(22870571-22870726)
chr4 (418-543)||(29669765-29669890)
chr4 (418-543)||(50858219-50858345)
chr4 (418-545)||(52214506-52214634)
chr4 (470-589)||(23311511-23311629)
chr4 (418-601)||(26942901-26943083)
chr4 (418-543)||(29669450-29669575)
chr4 (418-543)||(29734452-29734578)
chr4 (420-541)||(46332622-46332744)
chr4 (418-539)||(48843108-48843230)
chr4 (418-543)||(53740073-53740199)
chr4 (451-601)||(48046281-48046432)
chr4 (418-543)||(43972246-43972372)
chr4 (418-543)||(45427339-45427465)
chr4 (438-538)||(990949-991050)
chr4 (460-543)||(991138-991221)
chr4 (418-543)||(15665043-15665170)
chr4 (418-546)||(54595145-54595273)
chr4 (448-551)||(30491031-30491133)
chr4 (417-543)||(36558553-36558680)
chr4 (418-543)||(32988357-32988483)
chr4 (418-543)||(45427023-45427149)
chr4 (418-506)||(990732-990821)
chr4 (471-543)||(990492-990564)
chr4 (417-512)||(53739747-53739843)
chr4 (458-601)||(52043107-52043250)
chr4 (438-543)||(56509519-56509626)
chr4 (448-541)||(22867005-22867099)
chr4 (448-538)||(26942679-26942769)
chr4 (418-514)||(23018361-23018458)
chr4 (418-506)||(51469377-51469466)
chr4 (438-538)||(26942464-26942564)
chr4 (471-541)||(43971984-43972054)
chr4 (172-244)||(7367541-7367613)
chr4 (458-553)||(3137021-3137116)
chr4 (477-554)||(3137710-3137786)
chr4 (501-545)||(13254358-13254402)
[»] chr6 (31 HSPs)
chr6 (418-554)||(1205940-1206076)
chr6 (416-543)||(10418425-10418553)
chr6 (418-541)||(1205639-1205762)
chr6 (417-543)||(12134570-12134697)
chr6 (418-543)||(24055196-24055322)
chr6 (417-543)||(1408901-1409028)
chr6 (418-539)||(9602078-9602199)
chr6 (417-543)||(31960-32085)
chr6 (418-543)||(8143909-8144034)
chr6 (418-543)||(19054384-19054510)
chr6 (418-543)||(19753691-19753817)
chr6 (418-543)||(30539126-30539252)
chr6 (417-545)||(10733523-10733652)
chr6 (502-601)||(1206208-1206307)
chr6 (478-577)||(20855887-20855986)
chr6 (418-540)||(21067147-21067270)
chr6 (418-540)||(21088938-21089061)
chr6 (417-545)||(1744927-1745056)
chr6 (485-593)||(9156138-9156246)
chr6 (448-545)||(22889653-22889751)
chr6 (448-545)||(22911259-22911357)
chr6 (420-540)||(21043871-21043992)
chr6 (533-611)||(26400944-26401022)
chr6 (486-551)||(12308570-12308635)
chr6 (471-540)||(32215853-32215922)
chr6 (458-546)||(9237091-9237179)
chr6 (456-603)||(18286815-18286962)
chr6 (448-543)||(22874930-22875026)
chr6 (448-536)||(130761-130851)
chr6 (457-546)||(16509707-16509797)
chr6 (172-205)||(7282296-7282329)
[»] scaffold0006 (1 HSPs)
scaffold0006 (485-578)||(143088-143181)
[»] scaffold0054 (1 HSPs)
scaffold0054 (448-545)||(11112-11210)


Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 10 - 650
Target Start/End: Original strand, 350670 - 351307
Alignment:
Q  10 cagcaacacagctattttcatgtaggtcccgccactttgaaaatgagtaacgttactctcttgatttattattattagagtattgaaaagatggtactag 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||| |  | |||  ||  |      
T  350670 cagcaacacaactattttcatgtaggtcccgccactttgaaaatgagtaacgttactctcttgatttattattagatg-gtact--agagagtgtgtt-- 350764  T
Q  110 agaatgtgttacttgttgctccaatactatctattatcaatgaaacacagacacagcaccggcactgacacatagacaccgataataatttgaaaaggtg 209  Q
     |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  350765 -gcttgtgttacttgttgctccaatactatctattatcaatgaaacacagacacagcaccggcactgacacatagacaccgataataatttgaaaaggtg 350863  T
Q  210 aaagttattgaaagtaaccacatttgtcggtgtcggtgtcgctgtcatgcaagtgttagacaccaaacatgcctttgaatctcaagtgtcaatgctacat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  350864 aaagttattgaaagtaaccacatttgtcggtgtcggtgtcgctgtcatacaagtgttagacaccaaacatgcctttgaatctcaagtgtcaatgctacat 350963  T
Q  310 agtgattctcaggccactgcacatcattgccattcattgctattgcttctatgctatcacattgatcatgagttttgagtattgttgtaattgtcagtgc 409  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  350964 agtgattcccaggccactgcacatcattgccattcattgctattgcttctatgctatcacattgatcatgagttttgagtattgttgtaattgtcagtac 351063  T
Q  410 tttaactttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttc---aataccttca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||    
T  351064 tttaactttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttgttttgccttaattgcagccttcaataataccttca 351163  T
Q  507 ttgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaactag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  351164 ttgtgttgagtttgaaggggtggctttagtcccacattgcttacagatgtgacatgtgtagtgtttataaagcatgggcagccctcatcttacaaactag 351263  T
Q  607 tttttaagggcaaatttgtagttatttttagagttccctttata 650  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  351264 tttttaagggcaaatttgtggttatttttagagttccctttata 351307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 416 - 574
Target Start/End: Original strand, 662617 - 662774
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    |||||||||| ||||||||   ||||| ||| |||||||||||||||||||| ||||||| ||||||| |||||||||| ||| ||||| |||||||||     
T  662617 tttgttggaaattccgcctaa-ttgcggtccgcccctagtcgcctaattgcgccatttgggttgccttcattgcagcctccaacacctttattgtgttgg 662715  T
Q  516 gtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttat 574  Q
    |||||||||||| | ||||||||||| || ||||||||| |||| |||||||| |||||    
T  662716 gtttgaaggggtcgatttagtcccacttttcttagagatatgacctgtgtagtgtttat 662774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 416 - 601
Target Start/End: Complemental strand, 34250566 - 34250381
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    |||||||||| |||||||||  ||||| ||  | ||||| |||||||||||| ||||||| ||||||| |||||||||| ||| ||||| ||||||||      
T  34250566 tttgttggaaattccgccttaattgcggtcagctcctagccgcctaattgcgacatttgggttgccttcattgcagcctccaacaccttaattgtgttag 34250467  T
Q  516 gtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    |||||||||||||  ||| |||||||||||||||||||| |    ||||||||||| ||||||| ||| || |||||| |||||||    
T  34250466 gtttgaaggggtgaatttcgtcccacattgcttagagatattgattgtgtagttttaataaagcttggacaaccctcaccttacaa 34250381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 418 - 545
Target Start/End: Original strand, 45443171 - 45443299
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  45443171 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 45443270  T
Q  517 tttgaaggggtggctttagtcccacattg 545  Q
    ||||| ||||||| |||||||||||||||    
T  45443271 tttgagggggtggatttagtcccacattg 45443299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 44573217 - 44573343
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||||||||| |||||| ||| |||| |||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  44573217 tgttggaaattccgccttagttgcgatccgcccccagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 44573316  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  44573317 tttgagggggtggatttagtcccacat 44573343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 54368930 - 54369056
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  54368930 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 54369029  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  54369030 tttgagggggtggatttagtcccacat 54369056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 415 - 538
Target Start/End: Complemental strand, 24860276 - 24860152
Alignment:
Q  415 ctttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgtt 513  Q
    ||||||||||| ||| |||||  ||||| ||| |||||||| |||||| ||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  24860276 ctttgttggaaattctgcctttattgcggtccgcccctagttgcctaaattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgtt 24860177  T
Q  514 gagtttgaaggggtggctttagtcc 538  Q
    |  ||||| ||||||| ||||||||    
T  24860176 ggctttgagggggtggatttagtcc 24860152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 14170212 - 14170086
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  |||||  || ||||||| ||||||| ||||||||||||||||||||| |||||||||| ||  |||||||||||||||      
T  14170212 tgttggaagttccgcctttattgcggcccgcccctagccgcctaaattgcggcatttggtttgccttcattgcagcctccatcaccttcattgtgttggc 14170113  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||| ||| |||||||||||||    
T  14170112 tttgaggggctggatttagtcccacat 14170086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 27219220 - 27219346
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||| |||||||||||| ||| |||||||| ||||||      
T  27219220 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccgtaattgcagcctccaacaccttcatcgtgttggc 27219319  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  27219320 tttgagggggtggatttagtcccacat 27219346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 41380615 - 41380741
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  |||||  || ||||||||||||| ||||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  41380615 tgttggaaattccgccttaattgcggcccgcccctagtcgccttaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 41380714  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  41380715 tttgagggggtggatttagtcccacat 41380741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 545
Target Start/End: Complemental strand, 13769504 - 13769376
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||| ||  ||||| ||| ||||||||||||||| ||||  | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  13769504 tgttggaaattccgctttaattgcggtccgcccctagtcgcctaaattgcaacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 13769405  T
Q  517 tttgaaggggtggctttagtcccacattg 545  Q
    ||||| ||||||| |||||||||||||||    
T  13769404 tttgagggggtggatttagtcccacattg 13769376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 34715670 - 34715542
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||| ||| |||||||||  ||||||||| ||||||||||||||| ||||| | ||||||| ||||| || ||||||| ||| ||||||| |||||||    
T  34715670 tttgtttgaaattccgccttaattgcgttccgcccctagtcgcctaaattgcgacctttggttagccttcatcgcagcctccaacaccttcactgtgttg 34715571  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| ||||||| |||||||||||||    
T  34715570 gctttgagggggtggatttagtcccacat 34715542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 4255400 - 4255527
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||| ||||||||||||||| ||| | | ||||||| ||||| |||| ||||| ||| |||||||||||||||     
T  4255400 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgggacctttggttagccttcattgtagcctccaacaccttcattgtgttgg 4255499  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  4255500 ctttgagggggtggatttagtcccacat 4255527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 4256125 - 4256251
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||  | ||||||| ||||| |||||||||| ||| ||||| |||||||||      
T  4256125 tgttggaaattccgccttaattgcggtccccccctagtcgcctaaattgcaacctttggttagccttcattgcagcctccaacacctttattgtgttggc 4256224  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  4256225 tttgagggggtggatttagtcccacat 4256251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 462 - 592
Target Start/End: Original strand, 35035036 - 35035166
Alignment:
Q  462 attgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacat 561  Q
    |||||| ||||||  |||||||  ||||| ||||||| ||||||||||||||  ||||||||||||||  |||||| |||||| ||||||||| || | |    
T  35035036 attgcgacatttgagttgccttcgttgcaaccttcaacaccttcattgtgttaggtttgaaggggtggacttagtctcacatttcttagagatatggctt 35035135  T
Q  562 gtgtagtttttataaagcatgggcagccctc 592  Q
    ||||  | |||||||||| ||||||||||||    
T  35035136 gtgttctatttataaagcttgggcagccctc 35035166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 583
Target Start/End: Original strand, 31603899 - 31604034
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    ||||||||||||||||||||  |||||| || |||| |||||||||| ||| ||||||||||||||   ||||| |||| || ||||||| |  ||  ||    
T  31603899 cccctagtcgcctaattgcgatatttgggttacctttattgcagcctccaaaaccttcattgtgttacctttgagggggcggatttagtctcgtatcact 31603998  T
Q  548 tagagatgtgacatgtgtagtttttataaagcatgg 583  Q
    ||||||| ||||||||||||| ||| |||| |||||    
T  31603999 tagagatatgacatgtgtagtgtttctaaatcatgg 31604034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 543
Target Start/End: Complemental strand, 43101553 - 43101458
Alignment:
Q  449 ccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||  ||||| ||||||| |||||||||||||    
T  43101553 ccctagtcgcctaaattgcgacctttggttggccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 43101458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 536
Target Start/End: Original strand, 44573846 - 44573965
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||| ||| |||||||||  ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  44573846 tgttagaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 44573945  T
Q  517 tttgaaggggtggctttagt 536  Q
    ||||| ||||||| ||||||    
T  44573946 tttgagggggtggatttagt 44573965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 554
Target Start/End: Complemental strand, 39225208 - 39225101
Alignment:
Q  451 ctagtcgcctaattgcggcatttggtttgccttaattgcagccttca----ataccttcattgtgttgagtttgaaggggtggctttagtcccacattgc 546  Q
    |||| |||||||||||||||||||| ||||||| | |||||||| ||    | ||||||||||||||| || |||||| |||| ||||||||| ||||||    
T  39225208 ctagccgcctaattgcggcatttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgc 39225109  T
Q  547 ttagagat 554  Q
     |||||||    
T  39225108 ctagagat 39225101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 543
Target Start/End: Complemental strand, 50204050 - 50203944
Alignment:
Q  438 ttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagt 536  Q
    ||||| ||| ||||||||||||||| ||| | | ||||||| ||||| |||||||||| ||| |||||||||||||||  ||||| ||||||| ||||||    
T  50204050 ttgcggtccgcccctagtcgcctaaattgtgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtgggtttagt 50203951  T
Q  537 cccacat 543  Q
    | |||||    
T  50203950 ctcacat 50203944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 610
Target Start/End: Original strand, 54861447 - 54861609
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    ||||||| ||||||| ||||||||  || ||| ||| |||||||||| ||| |||||| |||||||| || ||||||||||| ||||||| ||| ||||     
T  54861447 cccctagccgcctaactgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcc 54861546  T
Q  548 tagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaactagtttt 610  Q
    | || || || ||| || ||| |||||||||| |||| |||  | | ||||||| ||||||||    
T  54861547 tggacatatggcatatgcagtgtttataaagcttgggtagcagttaccttacaagctagtttt 54861609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 588
Target Start/End: Original strand, 25568419 - 25568559
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    ||||||| | ||| ||| || ||||||| ||||||  |||||||||| ||| ||||||  ||||||| || ||||||||||| |||||  |||||||||     
T  25568419 cccctagacaccttattacgacatttgggttgcctacattgcagcctccaacaccttctctgtgttgggtgtgaaggggtgggtttagcaccacattgcc 25568518  T
Q  548 tagagatgtgacatgtgtagtttttataaagcatgggcagc 588  Q
    ||||||  |||| | |||||| |||||||| | ||||||||    
T  25568519 tagagacatgacctttgtagtgtttataaaccttgggcagc 25568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 44573533 - 44573656
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||  |||||||||  ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||   |||||||||      
T  44573533 tgttggagattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacacc---attgtgttggc 44573629  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  44573630 tttgagggggtggatttagtcccacat 44573656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 543
Target Start/End: Original strand, 3985712 - 3985790
Alignment:
Q  465 gcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||||||||| || ||||||| ||| ||||||| |||||||  ||||| ||||||| |||||||||||||    
T  3985712 gcggcctttggtttgccttcatagcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccacat 3985790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 490 - 589
Target Start/End: Complemental strand, 45016973 - 45016874
Alignment:
Q  490 agccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagcc 589  Q
    ||||| ||||||||||||||||||  || | || |||||  |||| | |||||||||||  |||| |||| |||||||| |||||||||| |||||||||    
T  45016973 agcctccaataccttcattgtgttaggtgtaaatgggtgaatttaattccacattgcttttagatatgacttgtgtagtgtttataaagcttgggcagcc 45016874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 47833839 - 47833749
Alignment:
Q  453 agtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||||| ||||| | ||||||| |||||||||||||||  ||| |||||| ||||||||  |||| |||||||| |||||||||||||    
T  47833839 agtcgcctaaattgcgacctttggttagccttaattgcagccaccaacaccttccttgtgttggctttg-aggggtggatttagtcccacat 47833749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 48685531 - 48685404
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||| |||||  ||||| ||| || |||||||||||| ||| | | ||||||| |  || |||||||||| ||| |||||||||||||||      
T  48685531 tgttggaaattctgccttaattgcggtccgcctctagtcgcctaaattgtgacctttggttagttttcattgcagcctccaacaccttcattgtgttggc 48685432  T
Q  517 tttga-aggggtggctttagtcccacat 543  Q
    |||||  ||||||| |||||||||||||    
T  48685431 tttgaggggggtggatttagtcccacat 48685404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 17105251 - 17105321
Alignment:
Q  173 actgacacatagacaccgataataatttgaaaaggtgaaagttattgaaagtaaccacatttgtcggtgtc 243  Q
    ||||||||||||||||  |||||||||| | ||  | ||||| |||||| |||||| ||||||||||||||    
T  17105251 actgacacatagacactaataataatttaagaaaataaaagtgattgaatgtaacctcatttgtcggtgtc 17105321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 610
Target Start/End: Original strand, 31606405 - 31606515
Alignment:
Q  500 accttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttac 599  Q
    |||||||||||||||  ||||| ||| | | ||||||| ||  | |||||||||| |  |||||||||| ||| |||| |||||||| |||||| |||||    
T  31606405 accttcattgtgttgcctttgaggggttagatttagtctcaagtcgcttagagatatagcatgtgtagtgtttctaaatcatgggcatccctcaccttac 31606504  T
Q  600 aaactagtttt 610  Q
    || || |||||    
T  31606505 aagctggtttt 31606515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 421 - 601
Target Start/End: Original strand, 4796253 - 4796433
Alignment:
Q  421 tggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttg 520  Q
    ||||| |||||||||| |||||  || ||||||| ||| ||||||| |||||||| ||||||| |||||||||| ||| ||||||||||||||| || ||    
T  4796253 tggaaattccgccttcattgcggcccgcccctagccgcataattgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtg 4796352  T
Q  521 aaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||||||||| ||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||| |||||||    
T  4796353 aaggggtggatttagtcacacattgcttagagatatggcatgtgtagtgtttataaagcatgggcagccctcaccttacaa 4796433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 417 - 593
Target Start/End: Complemental strand, 31973647 - 31973471
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||||||| |||| ||||| | ||| ||| ||||||| |||||||||| ||||||||  ||||||| |||||||||| ||| ||||||||||||||| |    
T  31973647 ttgttggaaattcctccttcctcgcgatccgcccctagccgcctaattgaggcatttgagttgcctttattgcagcctccaacaccttcattgtgttggg 31973548  T
Q  517 tttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctca 593  Q
    | |||| |||||| |||||||||||||||  ||||||| || | | |||||| |||||||||  |||||||||||||    
T  31973547 tgtgaaagggtggatttagtcccacattgtctagagatatggcctatgtagtgtttataaagtttgggcagccctca 31973471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 427 - 601
Target Start/End: Original strand, 16275143 - 16275316
Alignment:
Q  427 ttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaagggg 526  Q
    |||||||||| ||||| ||||||||||| | ||| |||||||||||||| ||||||| |||||||||| |  ||||||||||||||||  | | ||||||    
T  16275143 ttccgccttcattgcggtccacccctagccacctgattgcggcatttgggttgccttcattgcagcctccg-taccttcattgtgttggatgtcaagggg 16275241  T
Q  527 tggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||| |||||||||||||||| ||||||| || | |||||||| | | |||||  ||||||||||||| |||||||    
T  16275242 tggatttagtcccacattgcctagagatatggcctgtgtagtgtgtgtaaagtttgggcagccctcaccttacaa 16275316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 28010330 - 28010203
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||  ||||||||| ||||| ||||||| ||||| ||||||| |||||||||||||| |||||||||||||||     
T  28010330 ttgttggaaattccgcctttattgcggtctgcccctagtcacctaaattgcggcctttggcttgccttcattgcagccttcaacaccttcattgtgttgg 28010231  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  28010230 ctttgagggggtggatttagtcccacat 28010203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 13843588 - 13843714
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  13843588 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 13843687  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  13843688 tttgagggggtggatttagtcccacat 13843714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 418 - 601
Target Start/End: Complemental strand, 904970 - 904782
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttg-gtt----tgccttaattgcagccttcaataccttcattgtgt 512  Q
    |||||||| ||| |||||| ||| | ||| ||||||  ||| ||||||||||||||| |||    |||||| ||||||||||||||  ||||||||||||    
T  904970 tgttggaaattctgccttcattgtggtccgcccctatccgcttaattgcggcatttgagttgagttgccttcattgcagccttcaagcccttcattgtgt 904871  T
Q  513 tgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||  ||||||||||||| ||||||||||||||||| | | || || | |||||||| |||||||| | || ||| |||||| |||||||    
T  904870 tgcctttgaaggggtggatttagtcccacattgctaacatatatggcttgtgtagtgtttataaaacttgagcatccctcaccttacaa 904782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 37995847 - 37995721
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||  ||||||||||||||| ||||||| ||||||||||||| ||| |||| | ||| |||||||||||||||      
T  37995847 tgttggaaattccgcctttattgcggtctgcccctagtcgcctaaattgcggcctttggtttgccttcattccagcttccaacaccttcattgtgttggc 37995748  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  37995747 tttgagggggtggatttagtcccacat 37995721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 460 - 593
Target Start/End: Complemental strand, 15844394 - 15844262
Alignment:
Q  460 taattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgac 559  Q
    |||||||||||||||| || ||||  ||||| ||| ||| |||||||||||||||||| ||||||||||| |||||||||||||| | ||||||| ||||    
T  15844394 taattgcggcatttgggttaccttcgttgcaacctacaacaccttcattgtgttgagtgtgaaggggtggatttagtcccacatttcctagagatatgac 15844295  T
Q  560 atgtgtagtttttataaagcatgggcagccctca 593  Q
    | |||| ||  ||||||||  |||| ||||||||    
T  15844294 a-gtgttgtgcttataaagtttgggaagccctca 15844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 24918053 - 24918180
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||| ||| |||||||||| ||||| ||| |||||| |||||||| ||| | ||||||||||||||| |||||| | | ||| |||||||||||||||    
T  24918053 tttgttcgaaattccgccttcattgcggtccgcccctaatcgcctaaattgtgacatttggtttgccttcattgcaacttccaacaccttcattgtgttg 24918152  T
Q  515 agtttgaaggggtggctttagtcccaca 542  Q
      ||||| ||||||| ||||||||||||    
T  24918153 gctttgagggggtggatttagtcccaca 24918180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 13843904 - 13844030
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||| ||||  ||| | ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  13843904 tgttggaaattccaccttaattgtggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 13844003  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  13844004 tttgagggggtggatttagtcccacat 13844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 27760282 - 27760408
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||  ||||| ||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  27760282 tgttggaaattccgccttaattgcggtctgcccctggtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 27760381  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  27760382 tttgagggggtggatttagtcccacat 27760408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 584
Target Start/End: Complemental strand, 30587932 - 30587832
Alignment:
Q  484 aattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgg 583  Q
    ||||||| ||||||| ||||||| ||||||| | || || |||||| ||||||||||||||||| |||||| || |||||||||| | ||||||||||||    
T  30587932 aattgcaaccttcaacaccttcaatgtgttgggcttaaaagggtggatttagtcccacattgctcagagatatggcatgtgtagtgtgtataaagcatgg 30587833  T
Q  584 g 584  Q
    |    
T  30587832 g 30587832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 541
Target Start/End: Original strand, 20811354 - 20811469
Alignment:
Q  427 ttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggg 525  Q
    |||||||||  | ||| ||| ||||||||||||||| || || | ||||||| |||||||||||||||| ||| |||||||||||||||  ||||| |||    
T  20811354 ttccgccttaatagcggtccgcccctagtcgcctaaattccgacctttggttagccttaattgcagcctccaacaccttcattgtgttggctttgagggg 20811453  T
Q  526 gtggctttagtcccac 541  Q
    |||| |||||||||||    
T  20811454 gtggatttagtcccac 20811469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 541
Target Start/End: Original strand, 20837709 - 20837824
Alignment:
Q  427 ttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggg 525  Q
    |||||||||  | ||| ||| ||||||||||||||| ||||| | ||||||| |||||||||||||| | ||| |||||||||||||||  ||||| |||    
T  20837709 ttccgccttaatagcggtccgcccctagtcgcctaaattgcgacctttggttagccttaattgcagcatccaacaccttcattgtgttggctttgagggg 20837808  T
Q  526 gtggctttagtcccac 541  Q
    |||| |||||||||||    
T  20837809 gtggatttagtcccac 20837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 545
Target Start/End: Complemental strand, 31973337 - 31973210
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| ||| |||||| ||||  ||| |||| || |||||||||||||||||||| || |||| |||| |  || ||| |||||| |||||||| ||    
T  31973337 tgttggaaattctgccttcattgcagtccgcccccagccgcctaattgcggcatttgggtttccttcattgaaatctccaacaccttcgttgtgttgggt 31973238  T
Q  518 ttgaaggggtggctttagtcccacattg 545  Q
    |||||||||||| ||||||||| |||||    
T  31973237 ttgaaggggtggatttagtccctcattg 31973210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 543
Target Start/End: Complemental strand, 873865 - 873783
Alignment:
Q  461 aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||| ||||||||||||| |||||||| | ||| |||||||||||||||  ||||| ||||||| |||||||||||||    
T  873865 aattgcggcctttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 873783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 419 - 543
Target Start/End: Original strand, 27759967 - 27760092
Alignment:
Q  419 gttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    ||||||| |||||||||  ||||| ||| |||||||| |||||| ||||| | |||||||  |||| |||||||||| ||| || ||||||||||||  |    
T  27759967 gttggaaattccgccttaattgcggtcctcccctagtagcctaaattgcgacctttggttaaccttcattgcagcctccaacactttcattgtgttggct 27760066  T
Q  518 ttgaaggggtggctttagtcccacat 543  Q
    |||| ||||||| |||||||||||||    
T  27760067 ttgagggggtggatttagtcccacat 27760092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 24993961 - 24994088
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||| ||| |||| ||||  ||||| ||| |||||| |||||||| ||||| |||||||||| |||| |||||| | | ||| |||||||||||||||    
T  24993961 tttgttcgaaattccacctttattgcggtccgcccctaatcgcctaaattgcgacatttggtttaccttcattgcaacttccaacaccttcattgtgttg 24994060  T
Q  515 agtttgaaggggtggctttagtcccaca 542  Q
      ||||| ||||||| ||||||||||||    
T  24994061 gctttgagggggtggatttagtcccaca 24994088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 1028305 - 1028180
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||  ||| ||||||||||||||| ||||  | ||||||| ||||  |||||||||| ||| |||||||||||||||      
T  1028305 tgttggaaattccgccttaattgcagtcc-cccctagtcgcctaaattgcaacctttggttagcctacattgcagcctccaacaccttcattgtgttggc 1028207  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  1028206 tttgagggggtggatttagtcccacat 1028180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 28010010 - 28009884
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaat-tgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||  ||  |||||||||||||||  ||| |||||||| ||||||| ||||||||||  || |||||| ||||||||      
T  28010010 tgttggaaattccgccttaattgcagtctgcccctagtcgcctaaactgcagcatttggcttgccttcattgcagcctcaaacaccttctttgtgttggc 28009911  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| || |||| |||||||||||||    
T  28009910 tttgagggcgtggatttagtcccacat 28009884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 603
Target Start/End: Complemental strand, 38604007 - 38603939
Alignment:
Q  534 agtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaac 603  Q
    |||||||||||||||| |||| || |||||||||| |||||||||| |||||| |||||| |||||||||    
T  38604007 agtcccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca-ccctcaccttacaaac 38603939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 543
Target Start/End: Complemental strand, 17016262 - 17016180
Alignment:
Q  461 aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||| | ||||||| ||||| |||  ||||| ||| |||||||||||||||  ||||| ||||||| |||||||||||||    
T  17016262 aattgcgacttttggttagccttcattatagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 17016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 497
Target Start/End: Complemental strand, 12595317 - 12595236
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttca 497  Q
    ||||||||| |||||||||  ||||| ||| ||||||||||||| |||| || | ||||||| ||||| |||||||||||||    
T  12595317 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaatttcgacttttggttagccttcattgcagccttca 12595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 38131658 - 38131781
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||| |||||  ||||| ||| |||||||||| |||| ||| ||| ||||||| ||||| |||||||||| ||| |||   |||||||||      
T  38131658 tgttggaaattctgcctttattgcggtccgcccctagtcgtctaaattgtggcctttggttggccttcattgcagcctccaacacc---attgtgttggc 38131754  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| || |||| |||||||||||||    
T  38131755 tttgagggagtggatttagtcccacat 38131781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 514
Target Start/End: Complemental strand, 17435452 - 17435354
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    ||||||||| ||| |||||  ||| | ||||||  || |||||||| ||| ||||||||||||| ||| |||||| ||| ||| |||||||||||||||    
T  17435452 ttgttggaaattcagcctttattgtggtccaccattaatcgcctaaattgaggcatttggtttgtcttcattgcaacctccaacaccttcattgtgttg 17435354  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 30587959 - 30588015
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttg 474  Q
    |||||||| ||| |||||  ||||| |||||||||||||||| ||||||| ||||||    
T  30587959 tgttggaaattctgcctttattgcgatccacccctagtcgcccaattgcgacatttg 30588015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 592
Target Start/End: Original strand, 51515606 - 51515781
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    ||||||||||||||||||| |||||   | ||||||| |||||||||| ||||||||| ||||||| ||||| |||| ||| ||||||||||||||| ||    
T  51515606 tgttggaatttccgccttcattgcggctctcccctagccgcctaattgtggcatttggattgccttcattgctgcctccaacaccttcattgtgttgggt 51515705  T
Q  518 ttg-aaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctc 592  Q
     || ||||||||| |||||||| ||||| | ||||||| || |||||||||| |||||| ||||||||||||||||    
T  51515706 gtgaaaggggtggatttagtccgacattacctagagatatgccatgtgtagtgtttatatagcatgggcagccctc 51515781  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 575
Target Start/End: Original strand, 6868025 - 6868182
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||||||||| ||||| ||  |||||| |||||||||||| |||||||| ||||| | | |||||||| ||| ||||||||| ||||| ||    
T  6868025 tgttggaaattccgccttcattgcggtctgcccctaatcgcctaattgcagcatttgggttgccctcactgcagcctccaacaccttcattttgttgggt 6868124  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttata 575  Q
    |||||||||||| |||||||||||||| ||||||||| || | |||| ||| ||||||    
T  6868125 ttgaaggggtggatttagtcccacattacttagagatatggcctgtgcagtgtttata 6868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 31305602 - 31305728
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||||||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  31305602 tgttggaaattccgccttaattgcggtccacccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 31305701  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  31305702 tttgagggggtggatttagtcccacat 31305728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 431 - 601
Target Start/End: Complemental strand, 34626973 - 34626803
Alignment:
Q  431 gccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggc 530  Q
    |||||| ||| | ||| ||||||| | ||||||||| |||| | | ||||||| |||||||||| ||| ||||||||| ||||| || |||||| ||||     
T  34626973 gccttcattgtggtccgcccctagccacctaattgcagcatcttggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaaggagtgga 34626874  T
Q  531 tttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||||||| |||||| |  |||||| || |||||||||| |||||||||| ||||||||||||| |||||||    
T  34626873 tttagtctcacatttcccagagatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaa 34626803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 610
Target Start/End: Complemental strand, 41590439 - 41590249
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    ||||| || |||||||||| ||||| ||| | ||||| ||||||||||||| ||| |||| ||||| |||||||||| ||| ||||||||||||| | ||    
T  41590439 tgttgaaaattccgccttcattgcggtccgcacctagccgcctaattgcggaattgggtt-gccttcattgcagcctccaacaccttcattgtgtcgggt 41590341  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaactagtttt 610  Q
     ||||||||||| |||||| ||||||| | |||| || ||   ||||||| | ||||||||| ||| || |||||||||||||| || |||||    
T  41590340 gtgaaggggtgggtttagttccacatttcctagaaatatggtctgtgtag-tgttataaagcttggtcaaccctcatcttacaagctggtttt 41590249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 33879991 - 33879865
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| | |||||||  ||||| ||||||||||||| ||||| ||||| | ||||||||||||| |||||||||| ||| |||||||||||||||      
T  33879991 tgttggaaataccgcctttattgcggtccacccctagtcacctaaattgcgacctttggtttgccttcattgcagcctccaacaccttcattgtgttggc 33879892  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    |||||  |||||| |||||||||||||    
T  33879891 tttgagagggtggatttagtcccacat 33879865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 33964264 - 33964390
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| | |||||||  ||||| ||||||||||||| ||||| ||||| | ||||||||||||| |||||||||| ||| |||||||||||||||      
T  33964264 tgttggaaataccgcctttattgcggtccacccctagtcacctaaattgcgacctttggtttgccttcattgcagcctccaacaccttcattgtgttggc 33964363  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    |||||  |||||| |||||||||||||    
T  33964364 tttgagagggtggatttagtcccacat 33964390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 599
Target Start/End: Complemental strand, 12581526 - 12581374
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaag-gggtggctttagtcccacattgc 546  Q
    ||||||| ||||||| | |||||||||| |||||||  || |||| | ||| ||||||||||||||| || ||||  |||||| ||||||||||| ||||    
T  12581526 cccctagccgcctaagtccggcatttgggttgcctttgtttcagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtcccacgttgc 12581427  T
Q  547 ttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttac 599  Q
      | |||| || ||||| |||| |||||||||||||||||||||||| |||||    
T  12581426 ccaaagatatggcatgtttagtgtttataaagcatgggcagccctcaccttac 12581374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 541
Target Start/End: Original strand, 45264554 - 45264678
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||| |||||  ||||| ||| ||||| ||||||||| ||||||| |||||||||||||  ||||||||| ||| |||||||||||||||      
T  45264554 tgttggaaattctgcctttattgcggtccgccccttgtcgcctaaattgcggcctttggtttgccttctttgcagcctccaacaccttcattgtgttggc 45264653  T
Q  517 tttgaaggggtggctttagtcccac 541  Q
    ||||| ||||||| |||||||||||    
T  45264654 tttgagggggtggatttagtcccac 45264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 2697544 - 2697418
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||||||| ||||||||||| ||| ||| ||||||||| ||| |||||||||| ||| ||||||||||||  |      
T  2697544 tgttggaaattccgcctttattgcggtccacccttagtcgcctaaattgaggcctttggtttgtcttcattgcagcctccaacaccttcattgtgacggc 2697445  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  2697444 tttgagggggtggatttagtcccacat 2697418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 17419678 - 17419804
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||| | ||  ||||||||||||| ||||||| | ||||||| ||||||||||||||||  || |||||||||||||||      
T  17419678 tgttggaaattccgccttaattgtggtctgcccctagtcgccttaattgcgacctttggttagccttaattgcagcctcaaacaccttcattgtgttggc 17419777  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  17419778 tttgagggggtggatttagtcccacat 17419804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 51188952 - 51188890
Alignment:
Q  492 ccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagat 554  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  51188952 ccttcaacaccttcattgtgttgggtttgaaggggtggatttagtcccacattgcttagagat 51188890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 448 - 580
Target Start/End: Complemental strand, 7908027 - 7907894
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaa-ggggtggctttagtcccacattgc 546  Q
    ||||||| |||||||||| ||||||||| ||||||| |||||| ||| |   |  |||||||||||| || |||| ||||||| |||||||||||||| |    
T  7908027 cccctagccgcctaattgtggcatttgggttgccttcattgcatcctccggcagtttcattgtgttgggtgtgaaaggggtggatttagtcccacatttc 7907928  T
Q  547 ttagagatgtgacatgtgtagtttttataaagca 580  Q
    | |||||| || |||||||||| |||||||||||    
T  7907927 tcagagatatggcatgtgtagtgtttataaagca 7907894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 554
Target Start/End: Complemental strand, 5087970 - 5087834
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||| | ||| |||||| ||||| ||||||||||| || ||||||| || |||||| || |||| |||||| ||| ||| |||||||||||| ||| |    
T  5087970 tgttggcaattctgccttcattgcggtccacccctagccgtctaattgtggtatttgggtttccttcattgcaacctccaacaccttcattgtgctgaat 5087871  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagat 554  Q
     | ||||||||| || |||||| ||||||||||||||    
T  5087870 attaaggggtggattcagtccctcattgcttagagat 5087834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 545
Target Start/End: Original strand, 13978476 - 13978604
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||||||| |||||| ||| ||||  ||| || |||| |||| ||||||| ||||||  ||||||| |||||| ||| |||||| |||||||||||| |    
T  13978476 ttgttggaaattccgctttcattgcaatcctccgctagccgcccaattgcgacatttgtgttgccttcattgcatcctccaatacgttcattgtgttggg 13978575  T
Q  517 tttgaaggggtggctttagtcccacattg 545  Q
    | ||||||| || ||||||||||||||||    
T  13978576 tgtgaagggatgtctttagtcccacattg 13978604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 601
Target Start/End: Complemental strand, 40566478 - 40566295
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||||||| |||||||||| ||| | |||||| || | | |||| |||||||| |||| ||||||| ||| |||| | ||| ||||||||||||||| |    
T  40566478 ttgttggaagttccgccttcattgtggtccaccactggcccccta-ttgcggcagttgggttgccttcattacagcttccaacaccttcattgtgttggg 40566380  T
Q  517 tttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    | ||||||| ||| || ||||||| ||||| ||| ||| || | |||||||| |||| ||| | |||| |||||||| |||||||    
T  40566379 tgtgaagggatggattcagtcccatattgcctagcgatatggcctgtgtagtgtttacaaaacgtgggaagccctcaacttacaa 40566295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 591
Target Start/End: Complemental strand, 19811193 - 19811050
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    ||||||| |||||||||| ||||||||| ||||||| |||||||||| |||  ||||| |||||||| || |||||  |||| ||||||||||| ||||     
T  19811193 cccctagccgcctaattgtggcatttgggttgccttcattgcagcctccaactccttcgttgtgttgggtgtgaagatgtggatttagtcccacgttgcc 19811094  T
Q  548 tagagatgtgacatgtgtagtttttataaagcatgggcagccct 591  Q
    ||||||| || | ||| |||| ||| || ||| |||||| ||||    
T  19811093 tagagatatggcctgtttagtgtttttatagcttgggcaaccct 19811050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 20735412 - 20735539
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    |||||| || |||||||||  ||||| ||  ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||     
T  20735412 ttgttgaaaattccgccttaattgcggtctgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttgg 20735511  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||| ||||||||    
T  20735512 ctttgagggggtggatttaatcccacat 20735539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 4022338 - 4022212
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| || ||||||  ||||| ||| ||||| ||||||||| ||||||| |||||||||||||  | ||| ||| ||| |||||||||||||||      
T  4022338 tgttggaaatttcgcctttattgcggtccgccccttgtcgcctaaattgcggcctttggtttgccttcgtcgcaacctccaacaccttcattgtgttggc 4022239  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  4022238 tttgagggggtggatttagtcccacat 4022212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 444 - 586
Target Start/End: Complemental strand, 19810883 - 19810742
Alignment:
Q  444 tccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||||||  ||||||||||||||||||| ||| ||| |||||| |||  || ||||||||||||||  || ||||||||| ||  |||||||||||    
T  19810883 tccacccctagctgcctaattgcggcatttgggttggcttcattgcaacctcgaacaccttcattgtgttaggtgtgaaggggt-gcactagtcccacat 19810785  T
Q  544 tgcttagagatgtgacatgtgtagtttttataaagcatgggca 586  Q
    ||| ||||||| || | |||| | | |||||||||| ||||||    
T  19810784 tgcctagagatatggcctgtgcaatgtttataaagcttgggca 19810742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 19937256 - 19937130
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||| |||||  ||| | ||| |||||| |||||||| ||||| | ||||||| |||||||||||| ||| ||| |||||||||||||||      
T  19937256 tgttggaaattctgccttaattgtggtccgcccctaatcgcctaaattgcgacctttggttagccttaattgcatcctccaacaccttcattgtgttggc 19937157  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  19937156 tttgatggggtggatttagtcccacat 19937130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 542
Target Start/End: Original strand, 19459660 - 19459739
Alignment:
Q  463 ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccaca 542  Q
    ||||||||||||| |||||| ||||||||||| |||  |||||||||||||| || ||| ||||||| ||||||||||||    
T  19459660 ttgcggcatttgggttgcctaaattgcagcctccaactccttcattgtgttgggtgtgagggggtgggtttagtcccaca 19459739  T

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Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 35926434 - 35926309
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||| ||| ||| |||||||||||||||      
T  35926434 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcaacctccaacaccttcattgtgttggc 35926335  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    |||| |||| | | |||||||||||||    
T  35926334 tttg-agggtttgatttagtcccacat 35926309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 8520448 - 8520351
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||| |||||| ||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  8520448 tgttggaaattccgctttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttg 8520351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 578
Target Start/End: Original strand, 13653327 - 13653420
Alignment:
Q  485 attgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaag 578  Q
    |||||||||||||| || || ||||| |||| |||| |||||||  ||||| ||||| |||||||||||| || |||||||||| |||||||||    
T  13653327 attgcagccttcaacacatttattgtattgaatttggaggggtgaatttagacccactttgcttagagatatggcatgtgtagtgtttataaag 13653420  T

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Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 579
Target Start/End: Original strand, 18998603 - 18998764
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||| |||||  || | ||| ||||||| || | |||||||| |||||| ||  ||| |||||||||  ||| ||||||  ||||||| ||    
T  18998603 tgttggaaattcctccttcactgtggtccgcccctagccgtcaaattgcggaatttgggttttcttcattgcagccaccaacaccttcgatgtgttgggt 18998702  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagc 579  Q
     |||| |||||| |||||||||||||||| ||||||| |||| | |||||| | ||||||||    
T  18998703 gtgaaagggtggatttagtcccacattgcctagagatatgacctatgtagtgtatataaagc 18998764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 543
Target Start/End: Complemental strand, 8520276 - 8520180
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||| ||||| ||||| | ||||||| ||||| |||||||||| |||  ||||||||||||||  ||||| ||||||| |||||||||||||    
T  8520276 cccctagtcacctaaattgcgacctttggttagccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccacat 8520180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 33248512 - 33248404
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    |||||||  |||||||||||||||| || |||| |||||||||  || ||| ||||||||||||||| || | || |||||| ||||||| ||||||||     
T  33248512 cccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgcc 33248413  T
Q  548 tagagatgt 556  Q
    |||| ||||    
T  33248412 tagacatgt 33248404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 33268684 - 33268576
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    |||||||  |||||||||||||||| || |||| |||||||||  || ||| ||||||||||||||| || | || |||||| ||||||| ||||||||     
T  33268684 cccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgcc 33268585  T
Q  548 tagagatgt 556  Q
    |||| ||||    
T  33268584 tagacatgt 33268576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 602
Target Start/End: Original strand, 12410327 - 12410482
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccaca-ttgc 546  Q
    |||||||  ||||| ||||||||||||| || ||||  ||||||||| ||| |||||||| |||||| || |||||| || | |||||||||||| || |    
T  12410327 cccctagctgcctagttgcggcatttgggttacctttgttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtcccacattttc 12410426  T
Q  547 ttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaa 602  Q
     ||||||| || | | ||||||  ||||||||  ||||||||| ||| ||||||||    
T  12410427 atagagatatggcctatgtagtgcttataaagtttgggcagccttcaccttacaaa 12410482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 14623125 - 14623195
Alignment:
Q  444 tccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    ||||||||||| |||||||| | ||| ||||| ||||||| |||||||||| ||| |||||||||||||||    
T  14623125 tccacccctagccgcctaatggtggcgtttgggttgccttcattgcagcctccaacaccttcattgtgttg 14623195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 537
Target Start/End: Original strand, 15013415 - 15013536
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| ||| ||||| |||||| ||| ||||||||||||| ||||||| | |||| ||  |||| |||||| ||| ||| |||||||||||||||     
T  15013415 ttgttggaaattctgccttagttgcggtccgcccctagtcgcctaaattgcgacctttgattaaccttcattgcaacctccaacaccttcattgtgttgg 15013514  T
Q  516 gtttgaaggggtggctttagtc 537  Q
     ||||| ||||||  |||||||    
T  15013515 ctttgagggggtgaatttagtc 15013536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 601
Target Start/End: Original strand, 7465371 - 7465555
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtg-------t 512  Q
    |||||| ||| |||||| |||| |||| || |||||||||||||||||||  |||| ||||||| || ||| ||| ||| ||| ||||||||       |    
T  7465371 ttggaaattctgccttcattgcattccgcctctagtcgcctaattgcggccattgggttgccttcatcgcaccctccaacacc-tcattgtgttggccat 7465469  T
Q  513 tgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    || |||||||||||||| | |||||||||||  ||||||||| |||  |||    | ||||||||||||||| |||||||| |||||||    
T  7465470 tgggtttgaaggggtggatatagtcccacatcacttagagatatgaactgt---atgtttataaagcatgggtagccctcaacttacaa 7465555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 601
Target Start/End: Complemental strand, 41590662 - 41590568
Alignment:
Q  500 accttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttac 599  Q
    ||||||||||||||| || ||| ||||||  |||||||||||||||| ||||||| |||| ||       |||||||||| |||||| ||||||||||||    
T  41590662 accttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatgacctg-------tttataaagcttgggcaaccctcatcttac 41590570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 43423232 - 43423296
Alignment:
Q  479 gccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||| ||||||||||| ||| |||||||||||||||  ||||| ||||||| |||| ||||||||    
T  43423232 gcctaaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttattcccacat 43423296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 601
Target Start/End: Original strand, 18998370 - 18998468
Alignment:
Q  503 ttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    |||||||||||| || ||||||||  |  |||||| |||||||| ||||||| |  | | |||||| |||||||||| || |||||||||| |||||||    
T  18998370 ttcattgtgttgggtgtgaaggggcagacttagtctcacattgcctagagatattgcttttgtagtgtttataaagcttgagcagccctcaccttacaa 18998468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 601
Target Start/End: Complemental strand, 17557829 - 17557752
Alignment:
Q  522 aggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    |||||||  |||| ||||||||||| ||||||| ||||  ||||||| |||||||||| | |||| |||||| |||||||    
T  17557829 aggggtgaatttaatcccacattgcctagagatatgac--gtgtagtgtttataaagcttaggcaaccctcaccttacaa 17557752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 438 - 610
Target Start/End: Original strand, 39590611 - 39590781
Alignment:
Q  438 ttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtc 537  Q
    ||||| ||| ||||||| |||||||||||||||||||| | ||||| ||||||| || ||| ||||||||||||||| || ||||||||||| | |||||    
T  39590611 ttgcggtccgcccctagccgcctaattgcggcatttgggt-gccttcattgcagtctccaacaccttcattgtgttg-gtgtgaaggggtggatatagtc 39590708  T
Q  538 ccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaactagtttt 610  Q
    |  |||||||||||||| || | ||| |||| |||||||||||||||||||||||| ||||||||| ||||||    
T  39590709 cagcattgcttagagatatggcctgtctagtgtttataaagcatgggcagccctcaccttacaaaccagtttt 39590781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 446 - 601
Target Start/End: Original strand, 30590368 - 30590523
Alignment:
Q  446 cacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattg 545  Q
    |||||||||  |||||| ||  |||||||| ||||||| |||||||||| ||| ||||||||||||||  || ||||||||||| |||||||||||||||    
T  30590368 cacccctagctgcctaactgtagcatttgggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaaggggtggatttagtcccacattg 30590467  T
Q  546 cttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    | |||| || || |||||||||| |||||||||| ||||||||||||| |||||||    
T  30590468 catagatatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaa 30590523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 418 - 579
Target Start/End: Original strand, 38886993 - 38887154
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||| ||||| ||||  ||||||||||| |||||||||||||||||||| |||||||  ||||||||| ||| ||||||||||||||| ||    
T  38886993 tgttggaaattcctccttcattgctgtccacccctagccgcctaattgcggcatttgggttgccttcgttgcagcctccaacaccttcattgtgttgggt 38887092  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagc 579  Q
     ||||||||| | |||| ||||||||||| ||||||| |||| | ||||||  |||||||||    
T  38887093 gtgaaggggttgatttaatcccacattgcctagagatatgacctatgtagtgcttataaagc 38887154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 418 - 554
Target Start/End: Complemental strand, 28488544 - 28488408
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| ||| |||||  ||| | ||||||||||  |||||||||| ||||||||  ||||||| ||||||||||| || ||||||||||||||| ||    
T  28488544 tgttggaaattctgcctttattgtggtccacccctaaccgcctaattgtggcatttgagttgccttcattgcagccttaaacaccttcattgtgttgggt 28488445  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagat 554  Q
    |||||||||||| |||||||||| |||||||| ||||    
T  28488444 ttgaaggggtggatttagtcccatattgcttatagat 28488408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 31766892 - 31767018
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||| ||||| ||| ||||||||| ||||| ||||||| ||||||||||||| |||||||||| |||  ||||||||||||||      
T  31766892 tgttggaaattccgccttcattgcggtccgcccctagtcacctaaattgcggcctttggtttgccttcattgcagcctccaaccccttcattgtgttggc 31766991  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  31766992 tttgagggggtggatttagtcccacat 31767018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 18905746 - 18905873
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaatt-gcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||| ||||||||||||||||| ||| | ||||||| |||||||||||||||| ||| ||||| |||||||||     
T  18905746 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaatttgcgacctttggttagccttaattgcagcctccaacacctttattgtgttgg 18905845  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  18905846 ctttgagggggtggatttagtcccacat 18905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 23028042 - 23027915
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||  ||||||||| ||||| ||||||| ||||| ||||||| |||||||||||||| |||||||||||||||     
T  23028042 ttgttggaaattccgcctttattgcggtctgcccctagtcacctaaattgcggcctttggcttgccttcattgcagccttcaacaccttcattgtgttgg 23027943  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  23027942 ctttgagggggtggatttagtcccacat 23027915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 23027718 - 23027592
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||| ||||  ||| ||||||||||||||| |||| |||||||| ||||||| ||||||||||  || |||||||||||||||      
T  23027718 tgttggaaattccgccttcattgcagtccgcccctagtcgcctaaattgcagcatttggcttgccttcattgcagcctcaaacaccttcattgtgttggc 23027619  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  23027618 tttgagggggtggatttagtcccacat 23027592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 448 - 577
Target Start/End: Original strand, 26639033 - 26639162
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    |||| |||| |||||||||| ||||||| || |||| ||||||| |  ||| |||||||||||||||||| ||| ||||||| ||||||||||||||||     
T  26639033 ccccaagtcacctaattgcgacatttgggtttccttcattgcagtccccaacaccttcattgtgttgagtgtgagggggtggatttagtcccacattgcc 26639132  T
Q  548 tagagatgtgacatgtgtagtttttataaa 577  Q
    | |||||  |||||||||||| ||||||||    
T  26639133 ttgagatacgacatgtgtagtgtttataaa 26639162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 417 - 545
Target Start/End: Original strand, 36997056 - 36997185
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||| ||||||||||||||| ||| | | ||||||| |||||||||||||||| ||| |||||||||||||||     
T  36997056 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgtgacctttggttagccttaattgcagcctccaacaccttcattgtgttgg 36997155  T
Q  516 gtttgaaggggtggctttagtcccacattg 545  Q
     ||||| |||||||  ||||||||||||||    
T  36997156 ctttgagggggtggaattagtcccacattg 36997185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 438 - 586
Target Start/End: Original strand, 34529899 - 34530047
Alignment:
Q  438 ttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtc 537  Q
    ||||| ||| ||||| | |||||||||||||||||||| ||||||| |||  ||||| | ||||||||||||||||| || | |||||| || |||||||    
T  34529899 ttgcggtcctcccctggccgcctaattgcggcatttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggatttagtc 34529998  T
Q  538 ccacattgcttagagatgtgacatgtgtagtttttataaagcatgggca 586  Q
    |||||||| |||||| | ||   |||||||| |||||||||| ||||||    
T  34529999 ccacattgattagaggtatggtctgtgtagtgtttataaagcttgggca 34530047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 416 - 529
Target Start/End: Complemental strand, 3184118 - 3184004
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    ||||||| || |||||||||  ||||| ||| ||||||||||||||| ||||||| ||||||||||||| |||||||||| ||| |||||||||||||||    
T  3184118 tttgttgtaaattccgcctttattgcggtccgcccctagtcgcctaaattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttg 3184019  T
Q  515 agtttgaaggggtgg 529  Q
      ||||| |||||||    
T  3184018 gctttgagggggtgg 3184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 21653216 - 21653344
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||| ||||||||||||||| |||||   || |||| |||||||||||||||| ||| |||||||||||||||     
T  21653216 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgattttcggttagccttaattgcagcctccaacaccttcattgtgttgg 21653315  T
Q  516 gtttga-aggggtggctttagtcccacat 543  Q
     |||||  ||||||| |||||||||||||    
T  21653316 ctttgaggggggtggatttagtcccacat 21653344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 577
Target Start/End: Original strand, 26642531 - 26642638
Alignment:
Q  470 atttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtt 569  Q
    |||||| || |||| ||||||| ||  || |||||||||||||||||| |||  |||||| |||||| ||||||||| ||||||| |||||||||||||     
T  26642531 atttgggtttccttcattgcagtctcaaacaccttcattgtgttgagtgtgattgggtggatttagttccacattgcctagagatatgacatgtgtagtg 26642630  T
Q  570 tttataaa 577  Q
    ||||||||    
T  26642631 tttataaa 26642638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 559
Target Start/End: Original strand, 25971317 - 25971459
Alignment:
Q  418 tgttggaatttccgccttc-gttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||| || |||||||||| |||||| ||||||||||| |||||||||| | ||||| | | ||||| |||||||| | ||| |||||||||||| || |    
T  25971317 tgttgaaaattccgccttcagttgcggtccacccctagccgcctaattgtgacattttggtagccttcattgcagcatccaacaccttcattgtgctggg 25971416  T
Q  517 tttgaaggggtggctttagtcccacattgcttagagatgtgac 559  Q
    | ||||||||||| || |||| ||||||||  |||||| ||||    
T  25971417 tgtgaaggggtggattcagtcacacattgccaagagatatgac 25971459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 559
Target Start/End: Complemental strand, 44933250 - 44933152
Alignment:
Q  461 aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgac 559  Q
    |||||| || ||||| ||||||| |||||| ||| ||| ||||||||||||||| |||||||||||||| ||||||| |||||  ||||||||| ||||    
T  44933250 aattgcagcctttgggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtctcacatcacttagagatatgac 44933152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 544
Target Start/End: Complemental strand, 20298731 - 20298602
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| ||| ||||  ||||| | ||||||  | ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  20298731 tttgttggaaattccgccttaattgcggtccgccccctgtcgcgtcaattgcaacctttggttagccttcattgcagcctccaacaccttcattgtgttg 20298632  T
Q  515 agtttgaaggggtggctttagtcccacatt 544  Q
      ||||| ||||||| ||||||||||||||    
T  20298631 gctttgagggggtggatttagtcccacatt 20298602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 501 - 589
Target Start/End: Original strand, 30602874 - 30602960
Alignment:
Q  501 ccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagcc 589  Q
    |||||| ||| ||| |||||||||  ||| ||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  30602874 ccttcactgtattgggtttgaagg--tggatttagacccacattgcttagagatgtggcatgtgtagtgtttataaaacatgggcagcc 30602960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 21085363 - 21085235
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| ||| ||||  ||||| | ||||||  | ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  21085363 tttgttggaaattccgccttaattgcggtccgccccctgtcgcgtcaattgcaacctttggttagccttcattgcagcctccaacaccttcattgtgttg 21085264  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| ||||||| |||||||||||||    
T  21085263 gctttgagggggtggatttagtcccacat 21085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 545
Target Start/End: Original strand, 15156986 - 15157101
Alignment:
Q  430 cgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtgg 529  Q
    ||||||| ||||| ||| || |||| || |||||||||| |||||| || ||||||||||||||| || | | ||| |||||||| || |||| ||||||    
T  15156986 cgccttcattgcggtccgcctctagccgtctaattgcggaatttgggttcccttaattgcagcctccattgcgttcgttgtgttgggtgtgaaagggtgg 15157085  T
Q  530 ctttagtcccacattg 545  Q
     |||||||||||||||    
T  15157086 atttagtcccacattg 15157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 509
Target Start/End: Original strand, 32931296 - 32931389
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattg 509  Q
    ||||||||| |||||||||  ||||| ||| ||||||||||||| ||||||| | ||||||| ||||| |||||||||| ||| ||||||||||    
T  32931296 ttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattg 32931389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 428 - 543
Target Start/End: Original strand, 40754345 - 40754462
Alignment:
Q  428 tccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttga-aggg 525  Q
    ||||||||  ||||| ||| ||||||||||||||| ||| ||| || |||||||||| |||||||||| ||| |||||||||||||||  |||||  |||    
T  40754345 tccgcctttattgcggtccgcccctagtcgcctaaattggggccttaggtttgccttcattgcagcctccaacaccttcattgtgttggctttgaggggg 40754444  T
Q  526 gtggctttagtcccacat 543  Q
    ||||  ||||||||||||    
T  40754445 gtggacttagtcccacat 40754462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 22277414 - 22277541
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    |||||| || ||||| |||  ||||| ||| ||||||||||||||| |||| || ||| ||||||||| |||||||||| ||| || |||||| |||||     
T  22277414 ttgttgaaaattccgtctttattgcggtccgcccctagtcgcctaaattgcagcctttagtttgccttcattgcagcctccaacactttcattttgttgg 22277513  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||  |||||||||||||    
T  22277514 ctttgagggggtgaatttagtcccacat 22277541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 543
Target Start/End: Original strand, 21653724 - 21653821
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttga-aggggtggctttagtcccacat 543  Q
    ||||||||||||||| |||||   || |||| |||||||||||||||| ||| |||||||||||||||  |||||  ||||||| |||||||||||||    
T  21653724 cccctagtcgcctaaattgcgatcttcggttagccttaattgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccacat 21653821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 601
Target Start/End: Original strand, 16956584 - 16956707
Alignment:
Q  478 tgccttaattgcagccttcaataccttcattgtgt-tgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataa 576  Q
    |||||| |||||| ||| ||| | ||||||||||| || || ||| ||||||| ||||||||| |||| | |||||||  |||||| ||||| |||||||    
T  16956584 tgccttcattgcaacctccaacatcttcattgtgtgtgtgtgtgagggggtgg-tttagtccctcattacctagagatacgacatgcgtagtgtttataa 16956682  T
Q  577 agcatgggcagccctcatcttacaa 601  Q
    |   ||||||||||||| |||||||    
T  16956683 attttgggcagccctcaccttacaa 16956707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 18900879 - 18900826
Alignment:
Q  485 attgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcc 538  Q
    |||||||||| | ||||||||| | |||||||| ||||||||||| ||||||||    
T  18900879 attgcagcctccgataccttcactatgttgagtgtgaaggggtggatttagtcc 18900826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 34248276 - 34248341
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgcctt 483  Q
    |||||||| |||||||||  ||||  ||| |||||||||||||||||||| ||||||  |||||||    
T  34248276 tgttggaaattccgcctttattgcaatccgcccctagtcgcctaattgcgacatttgagttgcctt 34248341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 417 - 601
Target Start/End: Original strand, 18183357 - 18183541
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||||||| |||||||||| ||||| ||||||| ||| ||||||| |||||||||||  ||||||| |||||||||| ||| ||||||||||||||| |    
T  18183357 ttgttggaaattccgccttcattgcgatccacccttagccgcctaagtgcggcatttgagttgccttcattgcagcctccaacaccttcattgtgttggg 18183456  T
Q  517 tttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    | ||| ||| ||| ||||||||   ||||| | ||||| || | |||||||| |||||||||| ||||||||| ||| |||||||    
T  18183457 tgtgatgggatggatttagtcctgaattgccttgagatatggcttgtgtagtgtttataaagcttgggcagccttcaccttacaa 18183541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 420 - 554
Target Start/End: Complemental strand, 26761036 - 26760902
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagttt 519  Q
    |||||| ||| |||||| ||||| ||  ||||||| |||||||| | ||||||||| ||||||| || ||||| ||||| ||||| ||||||||||||||    
T  26761036 ttggaaattctgccttcattgcggtctgcccctagccgcctaatcgtggcatttgggttgccttgatggcagcattcaacacctttattgtgttgagttt 26760937  T
Q  520 gaaggggtggctttagtcccacattgcttagagat 554  Q
    |||||||||| ||||||||||||||||||||||||    
T  26760936 gaaggggtgggtttagtcccacattgcttagagat 26760902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 43169133 - 43169259
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  43169133 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 43169232  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  43169233 tttgagggggtggatttagtcccacat 43169259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 418 - 544
Target Start/End: Complemental strand, 21214414 - 21214287
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||| | | ||||||| ||||||||||| |||| ||| |||||||||||||||      
T  21214414 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgtgacctttggttagccttaattgccgcctccaaaaccttcattgtgttggc 21214315  T
Q  517 tttgaaggggtggctttagtcccacatt 544  Q
    ||||| ||||||| ||||||||||||||    
T  21214314 tttgagggggtggatttagtcccacatt 21214287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 43195675 - 43195801
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  43195675 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 43195774  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||| | |||||||||||||    
T  43195775 tttgagggggtagatttagtcccacat 43195801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 545
Target Start/End: Complemental strand, 21214098 - 21213970
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||| | ||| ||||||||||||||| |||||   ||||||| ||||||||||| |||| ||| |||||||||||||||      
T  21214098 tgttggaaattccgccttaattgtggtccgcccctagtcgcctaaattgcgatctttggttagccttaattgccgcctccaacaccttcattgtgttggc 21213999  T
Q  517 tttgaaggggtggctttagtcccacattg 545  Q
    ||||| ||||||| |||||||||||||||    
T  21213998 tttgagggggtggatttagtcccacattg 21213970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 543
Target Start/End: Complemental strand, 15820271 - 15820188
Alignment:
Q  460 taattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||  ||||| ||||||| |||||||||||||    
T  15820271 taattgcggcctttggtttgcctttattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 15820188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 3977218 - 3977090
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| ||| ||||||||||||||| ||||  | || |||| ||||||||||||||||  || |||||||||||||||    
T  3977218 tttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcatccttcggttagccttaattgcagcctctaacaccttcattgtgttg 3977119  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      | ||| ||||||| |||||||||||||    
T  3977118 gctctgagggggtggatttagtcccacat 3977090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 5424971 - 5424843
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||| ||||  ||||  |||  |||||||||||||| ||||||| |||||||| |||| |||||||||| ||| |||||||||||||||    
T  5424971 tttgttggaaattccaccttaattgctgtccttccctagtcgcctaaattgcggcctttggttttccttcattgcagcctccaacaccttcattgtgttg 5424872  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      |||||  |||||| |||||||||||||    
T  5424871 cctttgagagggtgggtttagtcccacat 5424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 543
Target Start/End: Original strand, 17508998 - 17509126
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||  ||| ||||| ||||||| ||||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  17508998 tttgttggaaattccgccttaattgcagtccgcccctcgtcgccttaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttg 17509097  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| ||||||| ||||| |||||||    
T  17509098 gctttgagggggtggatttagccccacat 17509126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 25441586 - 25441713
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||| ||||  ||||| ||| ||||||||||||| ||||||||| ||||||| ||||| |||||||||| ||||||||| |||||||||     
T  25441586 ttgttggaaattccacctttattgcggtccgcccctagtcgcctaaattgcggcctttggttagccttcattgcagcctccaataccttgattgtgttg- 25441684  T
Q  516 gtttgaagggg-tggctttagtcccacat 543  Q
    | || |||||| ||| |||||||||||||    
T  25441685 gcttcaaggggttggatttagtcccacat 25441713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 42768547 - 42768419
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| | | ||||||||||||||| ||||| | ||||||| ||||| |||||||||  |||||||||||||||||||    
T  42768547 tttgttggaaattccgccttaattgcggttcgcccctagtcgcctaaattgcgacctttggttagccttcattgcagccaacaataccttcattgtgttg 42768448  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| | ||||  |||||||||||||    
T  42768447 gctttgaggaggtgaatttagtcccacat 42768419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 427 - 543
Target Start/End: Complemental strand, 18902068 - 18901951
Alignment:
Q  427 ttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggg 525  Q
    |||||||||  ||| | ||| ||||||||||||||| |||||   ||||||| ||||| |||||||||| ||| |||||||||||||||  ||||| |||    
T  18902068 ttccgccttaattgtggtccgcccctagtcgcctaaattgcgatctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggg 18901969  T
Q  526 gtggctttagtcccacat 543  Q
    |||| |||||||||||||    
T  18901968 gtggatttagtcccacat 18901951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 30166293 - 30166166
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||| | ||| ||||||||||||| ||||||| | ||||||| || |||||||||| || ||| ||||||| | |||||     
T  30166293 ttgttggaaattccgccttaattgtggtccgcccctagtcgccttaattgcgacctttggttagctttaattgcagtctccaacaccttcactatgttgg 30166194  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  30166193 ctttgagggggtggatttagtcccacat 30166166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 601
Target Start/End: Original strand, 36901147 - 36901217
Alignment:
Q  531 tttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||||| |  |||||||||| |||||||    
T  36901147 tttagtcccccattgcttagagatatgacatgtgtagtgtttataaagcttaagcagccctcaccttacaa 36901217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 543
Target Start/End: Complemental strand, 3976338 - 3976242
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||||||||| ||||| | ||  ||| |||||||||||||||| ||| ||||||||| |||||  ||||| ||||||| |||||||||||||    
T  3976338 cccctagtcgcctaaattgcgaccttcagttagccttaattgcagcctccaacaccttcattatgttggctttgagggggtggatttagtcccacat 3976242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 3976622 - 3976558
Alignment:
Q  479 gccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||||||||||| ||| |||||||||||||||  ||||| ||||||| |||||||||||||    
T  3976622 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 3976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 554
Target Start/End: Complemental strand, 3004118 - 3003983
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggt-ttgccttaattgcagccttcaataccttcattgtgttgagtt 518  Q
    |||||| ||| ||||| |||| | ||||||||||||  ||||||||  ||||||||  || |||| || ||||||| ||| ||||||||||||||| ||     
T  3004118 ttggaaattctgccttagttgtggtccacccctagttccctaattgtagcatttgggctttccttcatcgcagcctccaacaccttcattgtgttgggtg 3004019  T
Q  519 tgaaggggtggctttagtcccacattgcttagagat 554  Q
    ||| ||| ||| |||||||||||| ||| |||||||    
T  3004018 tgaggggatgggtttagtcccacaatgcctagagat 3003983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 539
Target Start/End: Original strand, 39583430 - 39583513
Alignment:
Q  456 cgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtccc 539  Q
    |||||||||||||||||||| ||||||| ||||||| || ||| || | ||||||||| ||| ||||| ||||| |||||||||    
T  39583430 cgcctaattgcggcatttgggttgccttcattgcagtctccaacacttccattgtgttcagtgtgaagaggtggatttagtccc 39583513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 514
Target Start/End: Complemental strand, 10849705 - 10849607
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    ||||||||| |||||||||  ||||| ||| |||||||| |||| ||||||||| |||| ||||| || |||||||||  ||| |||||||||||||||    
T  10849705 ttgttggaaattccgcctttattgcggtccgcccctagttgccttaattgcggcttttgatttgctttcattgcagccgccaacaccttcattgtgttg 10849607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 23054261 - 23054343
Alignment:
Q  461 aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||| | ||||||| || ||||||||||||| ||| ||||||| |||||||  ||||| ||||||| |||||||||||||    
T  23054261 aattgcgacctttggttagctttaattgcagcctccaacaccttcaatgtgttggctttgagggggtggatttagtcccacat 23054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 7877734 - 7877861
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||| ||  ||||| |||  |||||||||||||| ||||| | || |||| ||||| ||||||| || ||| | |||||||||||||     
T  7877734 ttgttggaaattccgctttaattgcggtccgtccctagtcgcctaaattgcgaccttcggttagccttcattgcagtctccaacatcttcattgtgttgg 7877833  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||| ||||    
T  7877834 ctttgagggggtggatttagtcctacat 7877861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 601
Target Start/End: Original strand, 14407953 - 14408064
Alignment:
Q  491 gccttcaataccttcattgtgttgagtttgaagggg-tggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagcc 589  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||| ||| |||||||  ||||||| ||   |||||||| |||||||||| || ||| ||    
T  14407953 gccttcaacaccttcattgtgttgagtgtgaaggggttggatttggtctcacattgtctagagatatggtctgtgtagtgtttataaagcttgtgcaacc 14408052  T
Q  590 ctcatcttacaa 601  Q
    || | |||||||    
T  14408053 cttaccttacaa 14408064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 593
Target Start/End: Complemental strand, 5511983 - 5511839
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    |||||||  ||| |||||||||||| || ||||||| |||  ||| | |||  |||||||||||||| || ||||||||||  |||||||| | |||||     
T  5511983 cccctagctgccaaattgcggcattagggttgccttcattatagcttccaacgccttcattgtgttgtgtgtgaaggggtgtatttagtccaatattgcc 5511884  T
Q  548 tagagatgtgacatgtgtagtttttataaagcatgggcagccctca 593  Q
    ||||||| |  | || ||||| |||||||||| ||||| |||||||    
T  5511883 tagagatatagcttg-gtagtgtttataaagcttgggctgccctca 5511839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 580
Target Start/End: Original strand, 21373914 - 21374046
Alignment:
Q  457 gcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaa---------ggggtggctttagtcccacattgct 547  Q
    ||||| ||||||||||||  ||||||| |||||||||| ||| ||| | ||||||||| || ||||         ||||||  ||||||||||||||||     
T  21373914 gcctacttgcggcatttgtgttgccttcattgcagcctccaacaccattattgtgttgggtgtgaaagggccaaaggggtgaatttagtcccacattgcc 21374013  T
Q  548 tagagatgtgacatgtgtagtttttataaagca 580  Q
    ||||||| || | |||||||| |||||||||||    
T  21374014 tagagatatggcctgtgtagtgtttataaagca 21374046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 554
Target Start/End: Complemental strand, 11339846 - 11339772
Alignment:
Q  480 ccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagat 554  Q
    |||| |||||||||| ||| ||||||||||||||  ||  ||| |||||| |||||||||||| ||| |||||||    
T  11339846 cctttattgcagcctccaacaccttcattgtgttaggtgcgaaagggtggatttagtcccacactgcctagagat 11339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 551
Target Start/End: Original strand, 14522459 - 14522525
Alignment:
Q  485 attgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttaga 551  Q
    |||||||||| |||||||||||||||| || || | ||||| ||| |||| ||||||||||| ||||    
T  14522459 attgcagcctccaataccttcattgtgatgggtgtaaagggctggatttaatcccacattgcataga 14522525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 610
Target Start/End: Original strand, 21374232 - 21374318
Alignment:
Q  524 gggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaactagtttt 610  Q
    |||||| |||||||  ||||||| ||||||| || | |||||||| ||| ||||||||||||| || ||| ||||||| || |||||    
T  21374232 gggtggatttagtcatacattgcatagagatatggcctgtgtagtgtttgtaaagcatgggcaaccttcaccttacaagctggtttt 21374318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 35872850 - 35872894
Alignment:
Q  501 ccttcattgtgttgagtttgaaggggtggctttagtcccacattg 545  Q
    |||||||||||||| || ||||||||||| |||| ||||||||||    
T  35872850 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 35872894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 554
Target Start/End: Original strand, 3973050 - 3973188
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    |||||||||| |||||||||| ||||| ||||||||||| |||||||||||  ||||||| ||||||| |||||||||||||| |||||||| ||||||     
T  3973050 tttgttggaaattccgccttcattgcggtccacccctagccgcctaattgcaacatttgggttgccttcattgcagccttcaacaccttcatcgtgttgg 3973149  T
Q  516 gtttgaaggggtggctttagtcccacattgcttagagat 554  Q
    |||||| ||||||| |||  ||||||  ||||| |||||    
T  3973150 gtttgagggggtggattttttcccacggtgcttggagat 3973188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 601
Target Start/End: Original strand, 32000769 - 32000892
Alignment:
Q  478 tgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaa 577  Q
    |||||| |||||||||||||| |||||||| ||||||  ||||| ||| ||| |||||||||||| ||||||||||| || | |||||||| ||||||||    
T  32000769 tgccttcattgcagccttcaacaccttcatggtgttggctttgaggggatggatttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaa 32000868  T
Q  578 gcatgggcagccctcatcttacaa 601  Q
    || ||||||||||||| |||||||    
T  32000869 gcttgggcagccctcaccttacaa 32000892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 602
Target Start/End: Complemental strand, 30611019 - 30610837
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||||||| |||| ||||| ||| | |||||| ||||  ||| | |||| |||||||| ||||||| |||||||||| ||| ||||||||||||||| |    
T  30611019 ttgttggaaattccaccttcattgtgatccacctctagctgcccacttgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttggg 30610920  T
Q  517 tttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaa 602  Q
    |  |||||||||| |||| || |||||||| ||||||| || | |   |||| |||||||||| ||||||||||||| ||||||||    
T  30610919 tgggaaggggtggatttaatctcacattgcctagagatatggcct---tagtgtttataaagcttgggcagccctcaccttacaaa 30610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 257480 - 257354
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  257480 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 257381  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  257380 tttgagggggtggatttagtcccacat 257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 438 - 579
Target Start/End: Complemental strand, 12840764 - 12840623
Alignment:
Q  438 ttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtc 537  Q
    ||||| ||| ||||||| | |||||||||||||||||| |||  || ||||||  || ||| |||||| |||||||| ||||||| |||||||||||||     
T  12840764 ttgcggtccgcccctagcctcctaattgcggcatttgggttgttttcattgcattctccaacaccttcgttgtgttgggtttgaaagggtggctttagtt 12840665  T
Q  538 ccacattgcttagagatgtgacatgtgtagtttttataaagc 579  Q
    ||||||||| ||||||| || | |||||||| ||||||||||    
T  12840664 ccacattgcctagagatatggcttgtgtagtgtttataaagc 12840623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 433 - 598
Target Start/End: Complemental strand, 16015606 - 16015441
Alignment:
Q  433 cttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctt 532  Q
    |||| ||||| ||| ||||||| | ||||||||||| ||| ||  |||||| ||| |  ||| ||| | |||||||||||||| | ||||||||||| ||    
T  16015606 cttcattgcgatccgcccctagccacctaattgcggaattaggaatgccttcatttccacctccaaaatcttcattgtgttgactgtgaaggggtggatt 16015507  T
Q  533 tagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatctta 598  Q
    ||||||||| |||| ||||||| || |||||||||| |||||||||  ||||||||||||| ||||    
T  16015506 tagtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcacctta 16015441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 448 - 601
Target Start/End: Original strand, 41709940 - 41710093
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    ||||||||||||||||||| |||||| | ||| ||| |||||| ||| ||| |||||||||||||||  ||||| ||||||| ||||||||||  | |||    
T  41709940 cccctagtcgcctaattgcagcatttaggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccatgtcgct 41710039  T
Q  548 tagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    |||| || || | ||| |||| ||||||||||||||||| |||||  |||||||    
T  41710040 tagacatatggcctgtctagtgtttataaagcatgggcatccctcgccttacaa 41710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 416 - 540
Target Start/End: Complemental strand, 43168108 - 43167983
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  43168108 tttgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttg 43168009  T
Q  515 agtttgaaggggtggctttagtccca 540  Q
      ||||| ||||||| ||||||||||    
T  43168008 gctttgagggggtggatttagtccca 43167983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 1663819 - 1663692
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| ||| |||||||| |||| ||||||||| ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  1663819 tttgttggaaattccgccttaattgcggtccgcccctagttgccttaattgcggcctttggttagccttcattgcagcctccaacaccttcattgtgttg 1663720  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      |||| |||||||| |||||||||||||    
T  1663719 gctttg-aggggtggatttagtcccacat 1663692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 582
Target Start/End: Original strand, 23721035 - 23721199
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||| ||||   |||| ||| ||||||| | |||||||||||||||||| ||||||| |||||||||| ||| | | |||||||||||       
T  23721035 tgttggaaattccacctttaatgcggtcctcccctagccacctaattgcggcatttgggttgccttcattgcagcctccaacaacatcattgtgttggac 23721134  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatg 582  Q
    |||||||||||| ||||||||| ||||| ||||| || || | | |||||| |||||||||||||    
T  23721135 ttgaaggggtgggtttagtccctcattgtttagaaatatggcctatgtagtgtttataaagcatg 23721199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 421 - 591
Target Start/End: Original strand, 28358978 - 28359149
Alignment:
Q  421 tggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttg 520  Q
    ||||| |||||| ||| ||| | ||| |||||||||  ||||||||||||||||| || |||| |||||||||| ||| ||||||||| | ||| || ||    
T  28358978 tggaaattccgcattcattgtggtccgcccctagtcatctaattgcggcatttgggtttccttcattgcagcctccaacaccttcattattttgggtgtg 28359077  T
Q  521 -aaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccct 591  Q
     || |||||| || ||||||||||||| ||||||| |  | |||||||| ||||||||||| ||||||||||    
T  28359078 aaatgggtggattcagtcccacattgcctagagatatagcctgtgtagtgtttataaagcaagggcagccct 28359149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 28909922 - 28910049
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||| | ||| ||||||||||||||| ||||| | |||||||||| || |||||||||| ||| |||||||||||||||     
T  28909922 ttgttggaaattccgcctttattgtggtccgcccctagtcgcctaaattgcgccctttggtttgctttcattgcagcctccaacaccttcattgtgttgg 28910021  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  28910022 ctttgagggggtggatttagtcccacat 28910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 420 - 554
Target Start/End: Complemental strand, 12305266 - 12305132
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagttt 519  Q
    |||||| |||||||||  ||||| ||  ||| |||  |||||||||||||||||||  || |||| ||||||||||||| ||||||||||||||| ||||    
T  12305266 ttggaaattccgcctttattgcggtctgcccttagctgcctaattgcggcatttgggctgacttatttgcagccttcaacaccttcattgtgttgggttt 12305167  T
Q  520 gaaggggtggctttagtcccacattgcttagagat 554  Q
     || || ||| |||||||||| |||||||||||||    
T  12305166 aaaaggatggatttagtcccatattgcttagagat 12305132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 457 - 598
Target Start/End: Complemental strand, 422834 - 422693
Alignment:
Q  457 gcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgt 556  Q
    ||||||| ||||||||||| ||||||  |||||||| | ||| ||||||||||||||| || |||||||||| ||||| ||||||||||| ||||||| |    
T  422834 gcctaatcgcggcatttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaaggggtgactttaatcccacattgcctagagatat 422735  T
Q  557 gacatgtgtagtttttataaagcatgggcagccctcatctta 598  Q
    | | | || |||  ||||||||| |||||||| |||| ||||    
T  422734 ggcctatgcagtgattataaagcttgggcagctctcacctta 422693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 418 - 579
Target Start/End: Original strand, 41389199 - 41389359
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| || | ||||| ||||| ||  ||| ||| || ||||||||||| |||| || | ||| ||||||||| |||| ||||||||||||||  ||    
T  41389199 tgttggaaatttcaccttcattgcggtctgcccgtagccgactaattgcggcctttgatt-gtcttcattgcagccatcaacaccttcattgtgttaggt 41389297  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagc 579  Q
     ||||||||||| |||||||||||||||||||||||| |  | |||||||| ||||||||||    
T  41389298 gtgaaggggtggatttagtcccacattgcttagagatatagcctgtgtagtatttataaagc 41389359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 601
Target Start/End: Complemental strand, 30899152 - 30899019
Alignment:
Q  458 cctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtg 557  Q
    |||||| | ||||||||| ||||||| ||||||||||| || ||||||| |||||||          ||||| ||||||||||||||||||||||||  |    
T  30899152 cctaatggtggcatttgggttgccttcattgcagcctttaacaccttcagtgtgttg----------ggtggatttagtcccacattgcttagagatagg 30899063  T
Q  558 acatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
     |||||||||| | |||||||| |||||||||||||||||||||    
T  30899062 tcatgtgtagtgtatataaagcttgggcagccctcatcttacaa 30899019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 590
Target Start/End: Complemental strand, 39080115 - 39079981
Alignment:
Q  456 cgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatg 555  Q
    |||||||||||||||||||| |||||||  || |||||| ||| ||| ||||||| | | || || |||||||| |||| || |||||||| |||||||     
T  39080115 cgcctaattgcggcatttgggttgccttcgttccagcctccaacaccctcattgtatcgggtgtggaggggtggatttaatctcacattgcctagagata 39080016  T
Q  556 tgacatgtgtagtttttataaagcatgggcagccc 590  Q
    ||||||||||||| |||||||| | || |||||||    
T  39080015 tgacatgtgtagtgtttataaaacttgtgcagccc 39079981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 433 - 598
Target Start/End: Complemental strand, 14596078 - 14595913
Alignment:
Q  433 cttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctt 532  Q
    |||| ||||| ||| |||| || | ||||||||||| ||| ||  |||||| ||| |  ||| ||| | |||||||||||||| | ||||||||||| ||    
T  14596078 cttcattgcgatccgcccccagccacctaattgcggaattaggaatgccttcatttccacctccaaaatcttcattgtgttgactgtgaaggggtggatt 14595979  T
Q  533 tagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatctta 598  Q
    ||| ||||| |||| ||||||| || |||||||||| |||||||||  ||||||||||||| ||||    
T  14595978 tagccccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcacctta 14595913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 513
Target Start/End: Complemental strand, 40122139 - 40122043
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgtt 513  Q
    |||||||| |||||||||  ||||| ||||||||||||||||||| ||||| | || |||| |||||||||||||||| ||| ||||||||||||||    
T  40122139 tgttggaaattccgccttaattgcggtccacccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgtt 40122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 479 - 610
Target Start/End: Complemental strand, 10406737 - 10406606
Alignment:
Q  479 gccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaag 578  Q
    ||||| |||||||||| ||| || |||| |||||||  ||||| | ||||| ||||||| |||||  ||||||||| || | |||||||| |||||||||    
T  10406737 gccttcattgcagcctccaacactttcactgtgttggctttgaggcggtgggtttagtctcacatctcttagagatatggcctgtgtagtgtttataaag 10406638  T
Q  579 catgggcagccctcatcttacaaactagtttt 610  Q
    ||||||||||||||| | ||||| || |||||    
T  10406637 catgggcagccctcaccgtacaagctggtttt 10406606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 40121831 - 40121705
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||  | || |||| |||||||||||||||| ||| ||||| |||||||||      
T  40121831 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgctaccttcggttagccttaattgcagcctccaacacctttattgtgttggc 40121732  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||| ||||||    
T  40121731 tttgagggggtggatttagttccacat 40121705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 546
Target Start/End: Original strand, 41387460 - 41387550
Alignment:
Q  456 cgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgc 546  Q
    |||||||||| | ||||||| ||||||| |||||| ||| ||| ||||||||||||||  || ||||||||||| ||||||||||||||||    
T  41387460 cgcctaattgtgacatttgggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtcccacattgc 41387550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 41670759 - 41670885
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||  ||| |||||||| |||||| ||||| | ||||||| ||||| |||||||||| ||| ||| |||||||||||      
T  41670759 tgttggaaattccgccttaattgcagtccgcccctagttgcctaaattgcgacctttggttagccttcattgcagcctccaacaccctcattgtgttggc 41670858  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  41670859 tttgagggggtggatttagtcccacat 41670885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 1661404 - 1661278
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  | ||| | | |||||||| |||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||| ||||      
T  1661404 tgttggaaattccgccttaatcgcggttcgcccctagttgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgcgttggc 1661305  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  1661304 tttgacggggtggatttagtcccacat 1661278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 601
Target Start/End: Complemental strand, 25589285 - 25589100
Alignment:
Q  415 ctttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    ||||||||||| ||| | |||| ||| | ||| |||||||  ||||| | || |||||||| ||||||| | | |||||| ||| | | ||| |||||||    
T  25589285 ctttgttggaaattctgtcttcattgtggtccgcccctagctgcctattagcagcatttgggttgccttcacttcagcctccaacatcctcactgtgttg 25589186  T
Q  515 agtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
     || ||||||||||  |||||||| ||||||||| || || || |||||||||| |||||||| | ||||||||||||  |||||||    
T  25589185 ggtgtgaaggggtgaatttagtcc-acattgcttggatatatggcatgtgtagtgtttataaaacttgggcagccctctccttacaa 25589100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 7135458 - 7135330
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||| ||  ||||| ||| ||||||||| ||||| ||||| | ||||||| ||||| |||||| ||| || | ||||||||||||||    
T  7135458 tttgttggaaattccgctttaattgcggtccgcccctagtcacctaaattgcgacctttggttagccttcattgcaacctccatttccttcattgtgttg 7135359  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| ||||||| ||||||| |||||    
T  7135358 gctttgagggggtggatttagtcacacat 7135330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 10193543 - 10193467
Alignment:
Q  463 ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtccc 539  Q
    ||||||||||||| |||||||||||||||||| |||  |||| ||||||||| || ||| ||||||| |||||||||    
T  10193543 ttgcggcatttgggttgccttaattgcagcctccaactcctttattgtgttgtgtgtgagggggtgggtttagtccc 10193467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 510
Target Start/End: Original strand, 29780352 - 29780443
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgt 510  Q
    |||||| |||| ||||  ||||| ||| ||||||||||||||| ||||||| ||| ||||||||| |||||||||| ||| |||||||||||    
T  29780352 ttggaaattccacctttattgcggtccgcccctagtcgcctaaattgcggcttttagtttgccttcattgcagcctccaacaccttcattgt 29780443  T

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Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 593
Target Start/End: Original strand, 46870238 - 46870381
Alignment:
Q  451 ctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaagggg-tggctttagtcccacattgctta 549  Q
    |||| ||| ||||| ||||||||||  |||| |  ||||||||| ||| || |||||||| | | || |||||||| ||| |||||||||||||||| ||    
T  46870238 ctagccgcataattacggcatttgggctgccatctttgcagcctccaacactttcattgtttagggtgtgaagggggtggatttagtcccacattgccta 46870337  T
Q  550 gagatgtgacatgtgtagtttttataaagcatgggcagccctca 593  Q
    | ||| || |||||||||| |||||||||| || ||| ||||||    
T  46870338 gggatatggcatgtgtagtatttataaagcttgagcaaccctca 46870381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 601
Target Start/End: Complemental strand, 16015891 - 16015749
Alignment:
Q  459 ctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtga 558  Q
    ||||||||||||||||| || |||| |||||||||| ||| |  ||||| |||||  || |||| |||  | |||| ||||||||||| ||||||| ||     
T  16015891 ctaattgcggcatttgggttaccttcattgcagcctccaacattttcatcgtgttcggtgtgaatgggcagatttattcccacattgcctagagatatgg 16015792  T
Q  559 catgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    | |  ||||| |||| ||||| ||||||||||||| |||||||    
T  16015791 ctttcgtagtgtttagaaagcttgggcagccctcaccttacaa 16015749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 37272232 - 37272176
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttg 474  Q
    |||||||| |||||||||  ||||| |||||||||||||||||||||||| ||||||    
T  37272232 tgttggaaattccgcctttattgcggtccacccctagtcgcctaattgcgacatttg 37272176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 601
Target Start/End: Complemental strand, 14596378 - 14596221
Alignment:
Q  444 tccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||| |||||| || ||||||||||||||||| || |||| ||||| |||| ||| |  ||||| |||||  || |||| |||  | |||| ||||||||    
T  14596378 tccatccctagccgtctaattgcggcatttgggttaccttcattgctgcctccaacattttcatcgtgttcggtgtgaatgggcagatttattcccacat 14596279  T
Q  544 tgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||| |||||||  | | |  ||||| |||| ||||| ||||||||||||| |||||||    
T  14596278 tgcctagagataaggctttcgtagtgtttagaaagcttgggcagccctcaccttacaa 14596221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 535
Target Start/End: Complemental strand, 39079829 - 39079724
Alignment:
Q  430 cgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtgg 529  Q
    ||||||| ||||| ||  ||||||| |  ||||||||||||||||  ||| ||| ||  |||||| ||| ||||||||||||||| || |||||||||||    
T  39079829 cgccttcattgcggtctgcccctagccatctaattgcggcatttgagttgtcttcatcacagcctccaacaccttcattgtgttgggtgtgaaggggtgg 39079730  T
Q  530 ctttag 535  Q
     |||||    
T  39079729 atttag 39079724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 29780092 - 29780164
Alignment:
Q  471 tttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||| |||| |||||||||| ||| |||||||||||||||| |||||  | |||| ||||||| |||||    
T  29780092 tttggttttccttcattgcagcctccaacaccttcattgtgttgactttgagagagtggatttagtctcacat 29780164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 543
Target Start/End: Original strand, 41670505 - 41670600
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||||||||| ||||| | ||||||| ||||| |||||| ||| ||| |||||| ||||||||  |||| ||||| || |||||||||||||    
T  41670505 cccctagtcgcctaatttgcgacctttggttagccttcattgcatcctccaacaccttcgttgtgttggctttg-aggggcggatttagtcccacat 41670600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 554
Target Start/End: Complemental strand, 14092366 - 14092259
Alignment:
Q  448 cccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgc 546  Q
    ||||||||||||| ||||||   ||||||  |||||||||| |||| | ||  |||||||||||| ||  | ||| ||||||| ||||||||||||||||    
T  14092366 cccctagtcgccttaattgcacaatttggactgccttaatttcagcttccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgc 14092267  T
Q  547 ttagagat 554  Q
     |||||||    
T  14092266 ctagagat 14092259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 554
Target Start/End: Complemental strand, 14402384 - 14402277
Alignment:
Q  448 cccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgc 546  Q
    ||||||||||||| ||||||   ||||||  |||||||||| |||| | ||  |||||||||||| ||  | ||| ||||||| ||||||||||||||||    
T  14402384 cccctagtcgccttaattgcacaatttggactgccttaatttcagcttccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgc 14402285  T
Q  547 ttagagat 554  Q
     |||||||    
T  14402284 ctagagat 14402277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 8585066 - 8585108
Alignment:
Q  501 ccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||||||||  ||||||||||||| |||||||||||||    
T  8585066 ccttcattgtgttggctttgaaggggtggatttagtcccacat 8585108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 534
Target Start/End: Original strand, 30296520 - 30296637
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||| | ||| ||||||||||||| ||||||| | ||||||| | ||| ||| ||||   ||| |||||||||||||||      
T  30296520 tgttggaaattccgccttaattgtgatccgcccctagtcgcctaaattgcgacctttggttagtcttcattacagcaaccaacaccttcattgtgttggc 30296619  T
Q  517 tttgaaggggtggcttta 534  Q
    ||||||||| ||| ||||    
T  30296620 tttgaagggttggattta 30296637  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 53738421 - 53738295
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||| | |||||||||  ||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||| |||||||||||||||      
T  53738421 tgttggtaattccgcctttattgcggtccacccctagtcgcctaaattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttggc 53738322  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  53738321 tttgagggggtggatttagtcccacat 53738295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 416 - 543
Target Start/End: Original strand, 50857901 - 50858029
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||||||| |||||||||  ||||| ||||||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||    
T  50857901 tttgttggaaattccgccttaattgcggtccacccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttg 50858000  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| ||||||| |||||||||||||    
T  50858001 gctttgagggggtggatttagtcccacat 50858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 598
Target Start/End: Original strand, 22870571 - 22870726
Alignment:
Q  444 tccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||||| |||||||||||  ||| ||| |||| || |||||| ||||||| || |||||||||| ||||||||||| |||| |||||||||||||    
T  22870571 tccacccctagccgcctaattgcaccatctgggttgctttcattgcaaccttcaacacattcattgtgtagagtttgaaggtgtggatttagtcccacat 22870670  T
Q  544 tgcttagagatgt-gacatgtgtagtttttataaagcatgggcagccctcatctta 598  Q
    ||||||||||| | | ||| |  ||| |||||||||  ||||||||||||||||||    
T  22870671 tgcttagagatatggccatttagagtgtttataaagtttgggcagccctcatctta 22870726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 29669890 - 29669765
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||||||||||||||||| ||||||||| ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  29669890 tgttggaaattccgccttaattgcggtccacccctagtcgccttaattgcggcctttggttagccttcattgcagcctccaacaccttcattgtgttggc 29669791  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    |||| |||||||| |||||||||||||    
T  29669790 tttg-aggggtggatttagtcccacat 29669765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 50858219 - 50858345
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||||||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||||      
T  50858219 tgttggaaattccgccttaattgcggtccacccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 50858318  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  50858319 tttgagggggtggatttagtcccacat 50858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 545
Target Start/End: Original strand, 52214506 - 52214634
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||| | | ||||||| |||||||||||||||| ||| |||||||||||||||      
T  52214506 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgagacctttggttagccttaattgcagcctccaacaccttcattgtgttggc 52214605  T
Q  517 tttgaaggggtggctttagtcccacattg 545  Q
    ||||| |||||||  ||||||||||||||    
T  52214606 tttgagggggtggaattagtcccacattg 52214634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 470 - 589
Target Start/End: Complemental strand, 23311629 - 23311511
Alignment:
Q  470 atttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtt 569  Q
    ||||||||||||||  ||||||||| ||| |||||  | |||||| |||||||||||||| |||||||| |||||| |||||||| || ||||||||||     
T  23311629 atttggtttgccttctttgcagcctccaacacctttgt-gtgttgggtttgaaggggtggatttagtcctacattgtttagagatatggcatgtgtagtg 23311531  T
Q  570 tttataaagcatgggcagcc 589  Q
    |||||||||| |||||||||    
T  23311530 tttataaagcgtgggcagcc 23311511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 418 - 601
Target Start/End: Complemental strand, 26943083 - 26942901
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||||||| | || || ||| ||||||| ||||||||||| | |||||| ||| ||| |||||||||||||| ||||| ||||||||| ||    
T  26943083 tgttggaaattccgcctacatttcggtccgcccctagccgcctaattgcagtatttggattgtcttcattgcagccttcaacacctttattgtgttgggt 26942984  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
     ||||| ||||  ||||||| |||| ||| ||||||| ||   |||||||| |||||||||| | |||| |||||| |||||||    
T  26942983 gtgaagaggtgaatttagtctcaca-tgcctagagatatggtctgtgtagtgtttataaagcttaggcacccctcaccttacaa 26942901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 29669575 - 29669450
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||| |||||| || ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  29669575 tgttggaaattccgccttaattgcggtccgcccctagtcgccttaattgctgcctttggttagccttcattgcagcctccaacaccttcattgtgttggc 29669476  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    |||| |||||||| |||||||||||||    
T  29669475 tttg-aggggtggatttagtcccacat 29669450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 29734452 - 29734578
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||| | ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| ||||||||||||||||     
T  29734452 tgttggaaattccgccttaattgtggtccgcccctagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttgac 29734551  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||  |||||||||||||    
T  29734552 tttgagggggtgaatttagtcccacat 29734578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 420 - 541
Target Start/End: Complemental strand, 46332744 - 46332622
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccaccccta-gtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtt 518  Q
    |||||| || ||||||| ||||| ||| |||||| | |||||||||||||||||||| ||||||| |||||||||||||| || |||||||  ||| |||    
T  46332744 ttggaaatttcgccttcattgcggtccgcccctaagccgcctaattgcggcatttgggttgccttcattgcagccttcaacacgttcattggattgggtt 46332645  T
Q  519 tgaaggggtggctttagtcccac 541  Q
    | ||||||||| |||||||||||    
T  46332644 ttaaggggtggatttagtcccac 46332622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 539
Target Start/End: Complemental strand, 48843230 - 48843108
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||||||||||||||||||| ||||||| |||| ||| |||| |||||||||||||| ||||||||| |||||      
T  48843230 tgttggaaattccgcctttattgcggtccacccctagtcgcctaaattgcggcctttgattttccttcattgcagccttcaacaccttcattttgttggc 48843131  T
Q  517 tttgaaggggtggctttagtccc 539  Q
    | ||| ||||||| |||||||||    
T  48843130 tctgagggggtggatttagtccc 48843108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 53740073 - 53740199
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||| | | || |||| |||||||||||||||| ||| |||||||||||||||      
T  53740073 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgtgaccttcggttagccttaattgcagcctccaacaccttcattgtgttggc 53740172  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  53740173 tttgagggggtggatttagtcccacat 53740199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 451 - 601
Target Start/End: Original strand, 48046281 - 48046432
Alignment:
Q  451 ctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaa-ggggtggctttagtcccacattgctta 549  Q
    |||| ||||||||||  ||||| || ||||||| |||||| ||| ||| ||||||| | ||||| || |||| ||||||| |||||||||||||||| ||    
T  48046281 ctagccgcctaattgtagcattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtcccacattgccta 48046380  T
Q  550 gagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||||| || |||||||||| |||| ||||  ||||| ||||||| |||||||    
T  48046381 gagatatggcatgtgtagtgtttacaaagtttgggccgccctcaccttacaa 48046432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 43972246 - 43972372
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||| ||||| ||||| ||  |||| |||||||||| ||||||| |||| |||||||| |||||||||| ||| |||||||||||||||      
T  43972246 tgttggaaattccaccttcattgcggtctgcccccagtcgcctaaattgcggcctttgatttgccttcattgcagcctccaacaccttcattgtgttggt 43972345  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||  |||||||||||||    
T  43972346 tttgagggggtgaatttagtcccacat 43972372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 45427465 - 45427339
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||   |||| ||| ||||||||||||||| ||||| | || |||| ||||| |||||||||| ||| |||||||||||||||      
T  45427465 tgttggaaattccgccttaactgcggtccgcccctagtcgcctaaattgcgaccttgggttagccttcattgcagcctccaacaccttcattgtgttggc 45427366  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  45427365 tttgagggggtggatttagtcccacat 45427339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 538
Target Start/End: Original strand, 990949 - 991050
Alignment:
Q  438 ttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagt 536  Q
    ||||| ||| ||||||||||||||| ||||| | ||||||| |||||||||||||||| ||| |||||||||||||||  ||||| ||||||| ||||||    
T  990949 ttgcggtccgcccctagtcgcctaaattgcgacctttggttagccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagt 991048  T
Q  537 cc 538  Q
    ||    
T  991049 cc 991050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 991138 - 991221
Alignment:
Q  460 taattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    |||||||| | ||||||| |||||||||||||||| ||| |||||||||||||||  ||||| ||||||| |||||||||||||    
T  991138 taattgcgacctttggttagccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 991221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 15665043 - 15665170
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggttt-gccttaattgcagccttcaataccttcattgtgttga 515  Q
    |||||||| |||||||||  ||||| ||| |||| |||||||||| ||||| | ||||| || ||||| |||||||||| ||| |||||||||||||||     
T  15665043 tgttggaaattccgccttaattgcggtccgcccccagtcgcctaaattgcgacctttgggttagccttcattgcagcctccaacaccttcattgtgttgg 15665142  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  15665143 ctttgagggggtggatttagtcccacat 15665170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 418 - 546
Target Start/End: Complemental strand, 54595273 - 54595145
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||||||||| |||||  ||  ||||||  |||||||||||||||||   ||||||| |||||| ||| ||| ||||||||||||  | ||    
T  54595273 tgttggaaattccgccttcattgcggaccgtccctagctgcctaattgcggcatttaagttgccttcattgcaacctccaacaccttcattgtgcggggt 54595174  T
Q  518 ttgaaggggtggctttagtcccacattgc 546  Q
     ||||||||||| | ||||||||||||||    
T  54595173 gtgaaggggtggatatagtcccacattgc 54595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 448 - 551
Target Start/End: Complemental strand, 30491133 - 30491031
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgct 547  Q
    ||||||| ||||||||||| |||  ||| ||||||| |||||||||| ||| ||||||| ||||||| || ||||||||||| |||||| |||||||||     
T  30491133 cccctagccgcctaattgcagcacctgggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttagt-ccacattgcc 30491035  T
Q  548 taga 551  Q
    ||||    
T  30491034 taga 30491031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 36558680 - 36558553
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| ||| |||||  ||||  ||| ||||||||| ||| ||||||||| ||||||||||||| || ||| ||| ||| ||||||| |||||||     
T  36558680 ttgttggaaattctgccttaattgcagtccgcccctagtcaccttaattgcggcctttggtttgccttcatagcaacctccaacaccttcactgtgttgg 36558581  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  36558580 ctttgagggggtggatttagtcccacat 36558553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 32988483 - 32988357
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| || |||||| ||||| ||||| | ||||||| ||||| |||||||||  ||| |||||||||||||||      
T  32988483 tgttggaaattccgccttaattgcggtccgccgctagtcacctaaattgcgacttttggttagccttcattgcagcccccaacaccttcattgtgttggc 32988384  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| | ||||| |||||||||||||    
T  32988383 tttgaggtggtggatttagtcccacat 32988357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 45427149 - 45427023
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||  ||| ||||||||||||||| ||||| | || |||| || || |||||||||| ||| |||||||||||||||      
T  45427149 tgttggaaattccgccttaattgctgtccgcccctagtcgcctaaattgcgaccttgggttagctttcattgcagcctccaacaccttcattgtgttggc 45427050  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| ||||| |||||||    
T  45427049 tttgagggggtggatttagccccacat 45427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 506
Target Start/End: Original strand, 990732 - 990821
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttca 506  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| ||||| | ||||||| |||||||||||||||| ||| |||||||    
T  990732 tgttggaaattccgccttaattgcggtccgcccctagtcgcctaaattgcgacctttggttagccttaattgcagcctccaacaccttca 990821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 990492 - 990564
Alignment:
Q  471 tttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||  ||||| ||||||  |||||||||||||    
T  990492 tttggttagccttaattgcagcctccaacaccttcattgtgttggctttgagggggtgaatttagtcccacat 990564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 512
Target Start/End: Original strand, 53739747 - 53739843
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgt 512  Q
    ||||||||| ||| |||||  ||||| ||| ||||||||||||||| ||||| | || |||| |||||||||||||||| ||| |||||||||||||    
T  53739747 ttgttggaaattctgccttaattgcggtccgcccctagtcgcctaaattgcgaccttcggttagccttaattgcagcctccaacaccttcattgtgt 53739843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 601
Target Start/End: Complemental strand, 52043250 - 52043107
Alignment:
Q  458 cctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtg 557  Q
    ||||||||||| |||||  ||| ||| |||||||||| ||| ||||||||||| | | || ||||||||||| ||||||| ||||||||  | |||| ||    
T  52043250 cctaattgcggaatttgtgttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaaggggtggatttagtctcacattgccaaaagatatg 52043151  T
Q  558 acatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
       ||| |||| |||||||||| |  |||||||||| |||||||    
T  52043150 gtctgtttagtgtttataaagcttatgcagccctcaccttacaa 52043107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 543
Target Start/End: Original strand, 56509519 - 56509626
Alignment:
Q  438 ttgcgttccacccctagtc-gcctaatt-gcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttag 535  Q
    ||||| ||| ||||||||| |||||| | ||||| ||||||||||||| |||||||| | ||| |||||||||||||||  ||||| ||||||| |||||    
T  56509519 ttgcggtccgcccctagtccgcctaaatcgcggcctttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttag 56509618  T
Q  536 tcccacat 543  Q
    ||| ||||    
T  56509619 tcctacat 56509626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 541
Target Start/End: Original strand, 22867005 - 22867099
Alignment:
Q  448 cccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccac 541  Q
    ||||||||||||| ||||||||| ||| ||||||||| |||||||| | ||| |||||| ||||| ||  ||||| ||||||| |||||||||||    
T  22867005 cccctagtcgccttaattgcggcctttagtttgccttcattgcagcttccaacaccttcgttgtgctggctttgagggggtggatttagtcccac 22867099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 26942769 - 26942679
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcc 538  Q
    ||||||| | ||||||||||| |||||| ||| ||| |||||| ||| ||| || |||||||||||| || ||||||||||| ||||||||    
T  26942769 cccctagccacctaattgcggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagtcc 26942679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 23018361 - 23018458
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    |||||| | |||||||||| ||||| |||  |||||||||||||| ||||| | ||||||| ||||| |||||| ||| ||| |||||||||||||||    
T  23018361 tgttggtaattccgccttcattgcggtccgtccctagtcgcctaaattgcgacctttggttagccttcattgcaacctccaacaccttcattgtgttg 23018458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 506
Target Start/End: Original strand, 51469377 - 51469466
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttca 506  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||| ||||||| | || |||||||||| |||||||||| ||| |||||||    
T  51469377 tgttggaaattccgcctttattgcggtccgcccctagtcgcctaaattgcgcctttgggtttgccttcattgcagcctccaacaccttca 51469466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 26942564 - 26942464
Alignment:
Q  438 ttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtc 537  Q
    ||||| ||||||||||| |||||||||  || |||||| ||| ||| |||||| ||| ||| || |||||||||||| || ||||||||||| ||| |||    
T  26942564 ttgcggtccacccctagccgcctaattagggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtatgaaggggtggattttgtc 26942465  T
Q  538 c 538  Q
    |    
T  26942464 c 26942464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 541
Target Start/End: Original strand, 43971984 - 43972054
Alignment:
Q  471 tttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccac 541  Q
    |||||||| |||| |||||||||| ||| |||||||||||||||  ||| | ||||||| |||||||||||    
T  43971984 tttggtttaccttcattgcagcctccaacaccttcattgtgttggctttaagggggtggatttagtcccac 43972054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 7367541 - 7367613
Alignment:
Q  172 cactgacacatagacaccgataataatttgaaaaggtgaaagttattgaaagtaaccacatttgtcggtgtcg 244  Q
    |||| ||||||||||||| |||||||||||| ||  |||| || |||||| |||||||||| |||| ||||||    
T  7367541 cactaacacatagacaccaataataatttgagaaaatgaaggtgattgaacgtaaccacatgtgtcagtgtcg 7367613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 553
Target Start/End: Complemental strand, 3137116 - 3137021
Alignment:
Q  458 cctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagaga 553  Q
    |||||||  ||||||| | ||||||| |||| ||||| ||| | | |||||||| || ||| ||| |||||| |||||||||||||||| ||||||    
T  3137116 cctaattctggcatttaggttgccttcattgtagcctccaacatcctcattgtgctgggttcgaatgggtggatttagtcccacattgcctagaga 3137021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 3137786 - 3137710
Alignment:
Q  477 ttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagat 554  Q
    ||||||| |||||||||| ||| ||||||||||||||| || ||||  ||||| |||||||| ||||| | |||||||    
T  3137786 ttgccttcattgcagcctgcaacaccttcattgtgttg-gtgtgaattggtggatttagtccgacattccctagagat 3137710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 13254358 - 13254402
Alignment:
Q  501 ccttcattgtgttgagtttgaaggggtggctttagtcccacattg 545  Q
    ||||||||||||||  ||||| ||||||| |||||||||||||||    
T  13254358 ccttcattgtgttggctttgagggggtggatttagtcccacattg 13254402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 418 - 554
Target Start/End: Complemental strand, 1206076 - 1205940
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| ||| |||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||| |||||||||| ||  |||||||| |||||  ||    
T  1206076 tgttggaaattctgccttcattgcggtccgcccctagccgcctaattgcggcatttgggttgccttcattgcagcctccagcaccttcatcgtgttaggt 1205977  T
Q  518 ttgaaggggtggctttagtcccacattgcttagagat 554  Q
     ||||||||||| ||||||||  || |||||||||||    
T  1205976 gtgaaggggtggatttagtccatcaatgcttagagat 1205940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 416 - 543
Target Start/End: Complemental strand, 10418553 - 10418425
Alignment:
Q  416 tttgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttg 514  Q
    ||||||||||||||||||||  ||||| ||| ||||||||||||| |||||||   ||||||| ||||| |||||||||| ||| |||||||||||||||    
T  10418553 tttgttggaatttccgccttaattgcggtccgcccctagtcgccttaattgcgatctttggttagccttcattgcagcctccaacaccttcattgtgttg 10418454  T
Q  515 agtttgaaggggtggctttagtcccacat 543  Q
      ||||| ||||||| |||||||||||||    
T  10418453 gctttgagggggtggatttagtcccacat 10418425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 418 - 541
Target Start/End: Complemental strand, 1205762 - 1205639
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||| ||||| ||||  ||||||||||| |||||||||| ||||||||| || |||| |||||||||| ||| || |||||||||||| ||    
T  1205762 tgttggaaattccaccttcattgcagtccacccctagccgcctaattgtggcatttgggtttccttcattgcagcctacaacactttcattgtgttgggt 1205663  T
Q  518 ttgaaggggtggctttagtcccac 541  Q
     ||||||||||| || ||||||||    
T  1205662 gtgaaggggtggattcagtcccac 1205639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 12134697 - 12134570
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||  | ||| ||||||||| ||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||||||     
T  12134697 ttgttggaaattccgcctttattctggtccgcccctagtcacctaaattgcggcctttggtttgccttcattgcagcctccaataccttcattgtgttgg 12134598  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| |||||||  ||||||||||||    
T  12134597 ctttgacggggtggacttagtcccacat 12134570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 24055322 - 24055196
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||| |||||  ||||| ||| ||||||||||||||| ||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  24055322 tgttggaaattctgccttaattgcggtccgcccctagtcgcctaaattgcgccctttggttagccttcattgcagcctccaacaccttcattgtgttggc 24055223  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  24055222 tttgagggggtggatttagtcccacat 24055196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 1408901 - 1409028
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||| ||| ||||| ||||||||| ||||| | ||||||| || || |||||||||| ||| |||||||||||||||     
T  1408901 ttgttggaaattccgccttaattgcggtccgccccttgtcgcctaaattgcgacctttggttagctttcattgcagcctccaacaccttcattgtgttgg 1409000  T
Q  516 gtttgaaggggtggctttagtcccacat 543  Q
     ||||| ||||||| |||||||||||||    
T  1409001 ctttgagggggtggatttagtcccacat 1409028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 418 - 539
Target Start/End: Complemental strand, 9602199 - 9602078
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagt 517  Q
    |||||||| |||| ||||| ||||  ||  ||||||| ||||||||||| |||||||| ||||||| ||| |||| | ||| ||||||||||||||| ||    
T  9602199 tgttggaaattccaccttcattgcagtctgcccctagccgcctaattgcagcatttggattgccttcattccagcttccaacaccttcattgtgttgggt 9602100  T
Q  518 ttgaaggggtggctttagtccc 539  Q
     ||||||||||| |||||||||    
T  9602099 gtgaaggggtggatttagtccc 9602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 32085 - 31960
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||||||| |||| ||||  |||||| |||||||||||| ||||||||||||||||   ||||||| ||||||| || ||| ||||||||| |||||      
T  32085 ttgttggaaattccacctttattgcgt-ccacccctagtcacctaattgcggcatttaagttgccttcattgcagtctccaacaccttcattttgttggc 31987  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||| ||||    
T  31986 tttgagggggtggatttagtccaacat 31960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 8143909 - 8144034
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcc-taattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||  |||||||||||| |||||||||| ||||||| ||||| |||||||||| ||| |||||||  ||||||      
T  8143909 tgttggaaattccgccttaattgcggtctgcccctagtcgccttaattgcggcctttggttagccttcattgcagcctccaacaccttcaacgtgttggc 8144008  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    |||| |||||||| |||||||||||||    
T  8144009 tttg-aggggtggatttagtcccacat 8144034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 19054384 - 19054510
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    ||||| || |||||||||  ||||| ||  ||||||||||||| ||||||| | ||||||| ||||| |||||||||| ||| |||||||||||||||      
T  19054384 tgttgaaaattccgccttaattgcgatcagcccctagtcgccttaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggc 19054483  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| |||||||  ||||||||||||    
T  19054484 tttgagggggtggaattagtcccacat 19054510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 19753817 - 19753691
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||  |||||||| |||||| ||||| | ||||||| ||||| |||||||||| ||| ||||||||||||||       
T  19753817 tgttggaaattccgccttaattgcggtctgcccctagttgcctaaattgcgacctttggttagcctttattgcagcctgcaacaccttcattgtgttagc 19753718  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||| |||||||||||||    
T  19753717 tttgagggggtggatttagtcccacat 19753691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 30539126 - 30539252
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||||||| |||| || ||||||||||||| |||| || || ||| ||| |||||||||||      
T  30539126 tgttggaaattccgcctttattgcggtccgcccctagtcgcctaaattgcagcctttggtttgccttcattgtagactccaacaccatcattgtgttggt 30539225  T
Q  517 tttgaaggggtggctttagtcccacat 543  Q
    ||||| ||||||  |||||||||||||    
T  30539226 tttgagggggtgaatttagtcccacat 30539252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 417 - 545
Target Start/End: Complemental strand, 10733652 - 10733523
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  ||||  |||  |||||||||||||| ||||| | ||||||| |||||  ||||||||| ||| | |||||||||||||     
T  10733652 ttgttggaaattccgccttaattgcagtccgtccctagtcgcctaaattgcgacctttggttagccttcgttgcagcctccaacatcttcattgtgttgg 10733553  T
Q  516 gtttgaaggggtggctttagtcccacattg 545  Q
     ||||| ||||||| |||||||||||||||    
T  10733552 ctttgagggggtggatttagtcccacattg 10733523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 601
Target Start/End: Complemental strand, 1206307 - 1206208
Alignment:
Q  502 cttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaa 601  Q
    ||||||||||||| || ||||||| ||  |||||||||||||| | ||||||| || | |||||||| |||||||||| | ||||||||||| |||||||    
T  1206307 cttcattgtgttgggtgtgaagggatgaatttagtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcagccctcaccttacaa 1206208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 577
Target Start/End: Original strand, 20855887 - 20855986
Alignment:
Q  478 tgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaa 577  Q
    |||||| ||||||||||||||| ||||||||   ||| ||||||||| || | ||||||| ||||||||||||| || |||| |||||||| ||||||||    
T  20855887 tgcctttattgcagccttcaatgccttcatttgattgtgtttgaaggagtcgatttagtctcacattgcttagaaatatgacttgtgtagtgtttataaa 20855986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 21067270 - 21067147
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| |||||||||  ||||| ||| ||||||||||| ||| ||| | | ||||||| ||||| |||||||||| ||| ||||||||||||||       
T  21067270 tgttggaaattccgccttaattgcggtccgcccctagtcgcataaattgtgacctttggttagccttcattgcagcctccaacaccttcattgtgtttgc 21067171  T
Q  517 tttgaaggggtggctttagtccca 540  Q
    ||||| ||||||| ||||||||||    
T  21067170 tttgagggggtggatttagtccca 21067147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 21089061 - 21088938
Alignment:
Q  418 tgttggaatttccgccttcgttgcgttccacccctagtcgcct-aattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgag 516  Q
    |||||||| ||| |||||  ||||| ||| ||||||||||||| ||||| | | ||||||| ||||| |||||||||| ||| ||||||||||||||       
T  21089061 tgttggaaattctgccttaattgcggtccgcccctagtcgccttaattgtgacctttggttagccttcattgcagcctccaacaccttcattgtgtttgc 21088962  T
Q  517 tttgaaggggtggctttagtccca 540  Q
    ||||| ||||||| ||||||||||    
T  21088961 tttgagggggtggatttagtccca 21088938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 545
Target Start/End: Complemental strand, 1745056 - 1744927
Alignment:
Q  417 ttgttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttga 515  Q
    ||||||||| |||||||||  | ||| ||| || | |||||||||| ||||| | ||||||| ||||| |||||||||| ||| ||||||||||||||      
T  1745056 ttgttggaaattccgccttaatcgcggtccgcctccagtcgcctaaattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgtttg 1744957  T
Q  516 gtttgaaggggtggctttagtcccacattg 545  Q
     ||||| |||||||  ||||||||||||||    
T  1744956 ctttgagggggtggagttagtcccacattg 1744927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 485 - 593
Target Start/End: Complemental strand, 9156246 - 9156138
Alignment:
Q  485 attgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatggg 584  Q
    |||||| ||| ||| ||||||| ||||||  |||||||||||||| |||| |||||||| |||| ||||| |  |||||||||| |||||||| |||||     
T  9156246 attgcatcctccaacaccttcactgtgttaggtttgaaggggtggatttattcccacatcgctttgagatatagcatgtgtagtgtttataaatcatgga 9156147  T
Q  585 cagccctca 593  Q
    || ||||||    
T  9156146 caaccctca 9156138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 22889751 - 22889653
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattg 545  Q
    ||||||||||||||| ||||| | ||||||||||||| ||| ||||||  || |||||||||||||||  ||||| ||| ||| ||| |||||||||||    
T  22889751 cccctagtcgcctaaattgcgacctttggtttgccttcattacagcctctaacaccttcattgtgttggctttgaggggctggattttgtcccacattg 22889653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 22911357 - 22911259
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattg 545  Q
    ||||||||||||||| ||||| | ||||||||||||| ||| ||||||  || |||||||||||||||  ||||| ||| ||| ||| |||||||||||    
T  22911357 cccctagtcgcctaaattgcgacctttggtttgccttcattacagcctctaacaccttcattgtgttggctttgaggggctggattttgtcccacattg 22911259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 540
Target Start/End: Complemental strand, 21043992 - 21043871
Alignment:
Q  420 ttggaatttccgccttcgttgcgttccacccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtt 518  Q
    |||||| ||| |||||  ||||| ||| ||||||||||| ||| ||| | | ||||||| ||||| |||||||||| ||| ||||||||||||||   ||    
T  21043992 ttggaaattctgccttaattgcggtccgcccctagtcgcataaattgtgacctttggttagccttcattgcagcctccaacaccttcattgtgtttgctt 21043893  T
Q  519 tgaaggggtggctttagtccca 540  Q
    ||| ||||||| ||||||||||    
T  21043892 tgagggggtggatttagtccca 21043871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 533 - 611
Target Start/End: Complemental strand, 26401022 - 26400944
Alignment:
Q  533 tagtcccacattgcttagagatgtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaactagttttt 611  Q
    |||||||||||||||||||||| || ||  || |||||||||||||| |||| ||| |||| ||||||| || ||||||    
T  26401022 tagtcccacattgcttagagatatggcacatgcagtttttataaagcgtgggaagctctcaccttacaacctggttttt 26400944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 12308635 - 12308570
Alignment:
Q  486 ttgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttaga 551  Q
    ||||| ||| ||| |||||||||||||||||||||||  ||||| ||||||| |||||| ||||||    
T  12308635 ttgcatcctccaacaccttcattgtgttgagtttgaaaaggtggatttagtctcacattacttaga 12308570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 32215853 - 32215922
Alignment:
Q  471 tttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtccca 540  Q
    ||||||||||||| |||||||||| ||| ||||||||| |||||  |||||  |||||| ||||||||||    
T  32215853 tttggtttgccttcattgcagcctccaacaccttcattatgttggttttgagagggtggatttagtccca 32215922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 546
Target Start/End: Original strand, 9237091 - 9237179
Alignment:
Q  458 cctaattgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgc 546  Q
    ||||||||||| |||||  ||||||| ||||||  || ||| ||||||||||||||| || |||||  |||| |||||| |||||||||    
T  9237091 cctaattgcggtatttgtcttgccttcattgcactctccaacaccttcattgtgttgtgtgtgaagtagtggatttagttccacattgc 9237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 603
Target Start/End: Original strand, 18286815 - 18286962
Alignment:
Q  456 cgcctaattgcggcattt-ggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagat 554  Q
    |||||||||||||||||| || |||  || |||||| ||| ||| |||||||  |||||| || ||||||||| | |||||||||||||| | |||||||    
T  18286815 cgcctaattgcggcattttgggttgggttcattgcatcctccaacaccttcaccgtgttgggtgtgaaggggttgatttagtcccacatttcctagagat 18286914  T
Q  555 gtgacatgtgtagtttttataaagcatgggcagccctcatcttacaaac 603  Q
     || | | ||||| | ||||||||| |||| ||| |||  |||||||||    
T  18286915 atggcctatgtag-tgttataaagcttggggagcactcgccttacaaac 18286962  T

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Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 543
Target Start/End: Complemental strand, 22875026 - 22874930
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacat 543  Q
    ||||||||||||||| ||||| | ||||||||||||| ||| ||||||  || ||||||||| |||||  ||||| ||| ||| ||| |||||||||    
T  22875026 cccctagtcgcctaaattgcgacctttggtttgccttcattacagcctctaacaccttcattatgttggctttgaggggctggattttgtcccacat 22874930  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 536
Target Start/End: Complemental strand, 130851 - 130761
Alignment:
Q  448 cccctagtcgcctaattgcggcatttggt-ttgccttaattgcagccttcaata-ccttcattgtgttgagtttgaaggggtggctttagt 536  Q
    ||||||| ||||||| ||| |||| |||  ||||||| |||||||||| ||| | |||||||||||||| || ||||||||||| ||||||    
T  130851 cccctagccgcctaactgcagcatatggggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagt 130761  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 16509707 - 16509797
Alignment:
Q  457 gcctaattgcggcatttggtttgccttaattgcagccttcaataccttcatt-gtgttgagtttgaaggggtggctttagtcccacattgc 546  Q
    |||| |||||| ||||||| ||||||| |||||||| |||||  |||||||| ||| ||  | |||| |||||| ||||||||||||||||    
T  16509707 gccttattgcgacatttgggttgccttcattgcagctttcaacgccttcatttgtgatggatgtgaacgggtggatttagtcccacattgc 16509797  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 7282296 - 7282329
Alignment:
Q  172 cactgacacatagacaccgataataatttgaaaa 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  7282296 cactgacacattgacaccgataataatttgaaaa 7282329  T

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Target: scaffold0006 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 578
Target Start/End: Original strand, 143088 - 143181
Alignment:
Q  485 attgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttagagatgtgacatgtgtagtttttataaag 578  Q
    |||||||||||||| || || ||||| |||| |||| |||||||  ||||| ||||| |||||||||||| || |||||||||| |||||||||    
T  143088 attgcagccttcaacacatttattgtattgaatttggaggggtgaatttagacccactttgcttagagatatggcatgtgtagtgtttataaag 143181  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 11210 - 11112
Alignment:
Q  448 cccctagtcgcctaa-ttgcggcatttggtttgccttaattgcagccttcaataccttcattgtgttgagtttgaaggggtggctttagtcccacattg 545  Q
    ||||||||||||||| ||||| | ||||||||||||| ||| ||||||  || |||||||||||||||  ||||| ||| ||| ||| |||||||||||    
T  11210 cccctagtcgcctaaattgcgacctttggtttgccttcattacagcctctaacaccttcattgtgttggctttgaggggctggattttgtcccacattg 11112  T

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