View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4698_high_3 (Length: 361)

Name: NF4698_high_3
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4698_high_3
NF4698_high_3
[»] chr5 (7 HSPs)
chr5 (18-259)||(38157313-38157554)
chr5 (59-259)||(29425380-29425582)
chr5 (99-259)||(27918776-27918936)
chr5 (59-259)||(29568183-29568385)
chr5 (59-259)||(1758232-1758434)
chr5 (59-259)||(29168339-29168541)
chr5 (260-352)||(38157905-38157997)
[»] chr3 (1 HSPs)
chr3 (59-259)||(25518568-25518770)
[»] chr4 (4 HSPs)
chr4 (63-259)||(18986188-18986386)
chr4 (59-259)||(27462084-27462286)
chr4 (59-259)||(27521149-27521351)
chr4 (59-259)||(27482223-27482425)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 38157313 - 38157554
Alignment:
Q  18 ataagggtcgtcgactggttctgtcgatcatcggaactggcaatgctcttcgccgctgtgtcaatgacccatgcctggccggatcaatccatgccggtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157313 ataagggtcgtcgactggttctgtcgatcatcggaactggcaatgctcttcgccgctgtgtcaatgacccatgcctggccggatcaatccatgccggtta 38157412  T
Q  118 aagggtcgtcaactggtttgccgcctctgcctctaatcagtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttattt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157413 aagggtcgtcaactggtttgccgcctctgcctctaatcaggagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttattt 38157512  T
Q  218 gaactctgctgaaaaaattacatctgaatctgattcaatggt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38157513 gaactctgctgaaaaaattacatctgaatctgattcaatggt 38157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 29425380 - 29425582
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  || |||| |||||||||||||||| |||||| ||||||||| ||||| |||||||||||  ||||    
T  29425380 aatgctcttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatca 29425479  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  29425480 gtagatgtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcatt 29425579  T
Q  257 ggt 259  Q
    |||    
T  29425580 ggt 29425582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 99 - 259
Target Start/End: Original strand, 27918776 - 27918936
Alignment:
Q  99 gatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcagtagatgtatatctgaagttattgatccttctgaggttaaag 198  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27918776 gatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatctgaagttattgatccttctgaggttaaag 27918875  T
Q  199 aaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggt 259  Q
    || |||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||    
T  27918876 aagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggt 27918936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 29568385 - 29568183
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  || ||||||||||||||||||||| ||||||  |||||||| ||||| |||||||||||  ||||    
T  29568385 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 29568286  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  ||  |||||||||||||| |    
T  29568285 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcatt 29568186  T
Q  257 ggt 259  Q
    |||    
T  29568185 ggt 29568183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 1758232 - 1758434
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  || ||| ||||||||||| ||||| ||||||   ||||||| ||||| ||||||||||| |||||    
T  1758232 aatgctcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatca 1758331  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  ||  ||||||||||||||||    
T  1758332 ggagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaat 1758431  T
Q  257 ggt 259  Q
    |||    
T  1758432 ggt 1758434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 29168339 - 29168541
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| || ||||||||  ||| ||||||  || ||||||||||||||||||||| ||||||  |||||||| ||||| |||||||||||  ||||    
T  29168339 aatgctcttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 29168438  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||  ||||||||||||| |||||| ||  ||  ||||||||||||||||    
T  29168439 gtagatgtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaat 29168538  T
Q  257 ggt 259  Q
    |||    
T  29168539 ggt 29168541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 38157905 - 38157997
Alignment:
Q  260 tatatggtttctaagtgtttttgtgtcaaagacaactatataggtactgatgaactggtcaattcctagttctatgtggtttcttgatgatgt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  38157905 tatatggtttctaagtgtttttgtgtcaaagacaactatataggtactcatgaactggtcaattcctagttctatgtggtttctttatgatgt 38157997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 25518568 - 25518770
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    |||||||||||| ||||||||  ||| ||||||  || |||||||||| | |||||||||||||||||||| |||| |||||||||||||||||  ||||    
T  25518568 aatgctcttcgctgctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatca 25518667  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | ||||||||||||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||  ||  ||||||||||||||||    
T  25518668 ggagatgtatatctgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaat 25518767  T
Q  257 ggt 259  Q
    |||    
T  25518768 ggt 25518770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 18986188 - 18986386
Alignment:
Q  63 ctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcagtag 160  Q
    ||||| |||||||||||  ||| ||||||  || ||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||| |||||| ||    
T  18986188 ctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggag 18986287  T
Q  161 atgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggt 259  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||  | ||||||||||||||||||||||||  ||   ||||||||||||||||||    
T  18986288 atgtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggt 18986386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 27462084 - 27462286
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  ||  |||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||  ||||    
T  27462084 aatgctcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatca 27462183  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | ||||||||||||||||||||||||||| |||||||||||||| ||||  || |||||||||||| |||||||||||  ||  ||||||||||||||||    
T  27462184 gcagatgtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaat 27462283  T
Q  257 ggt 259  Q
    |||    
T  27462284 ggt 27462286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 27521351 - 27521149
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| || |||  || ||||||||||||||||||||| |||||| ||||||||| ||||| ||||| |||||  ||||    
T  27521351 aatgctcttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatca 27521252  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | |||||||||||||||||||||||||||| ||||||||||||| ||||  || ||||||||||||||||| ||||||  ||  ||||||||||||||||    
T  27521251 gcagatgtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaat 27521152  T
Q  257 ggt 259  Q
    |||    
T  27521151 ggt 27521149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 27482223 - 27482425
Alignment:
Q  59 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 156  Q
    ||||||||| |||||||||||  ||| ||||||  ||  ||||||||||||||||| || |||||| ||||||||| ||||| |||||||||||  ||||    
T  27482223 aatgctcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatca 27482322  T
Q  157 gtagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaat 256  Q
    | |||||||||||||||||||| |||||| |||||||||||||| ||||  || |||||||||||| |||||||||||  ||  ||||||||||||||||    
T  27482323 gcagatgtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaat 27482422  T
Q  257 ggt 259  Q
    |||    
T  27482423 ggt 27482425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University