View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4698_low_1 (Length: 539)
Name: NF4698_low_1
Description: NF4698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4698_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 42141073 - 42141592
Alignment:
| Q |
18 |
gttagctccatagccaaacaacaatgttttttactaaccaaaacacctcagttaggcaacactctaaaaacttacatacatagacacgagaatgtaattg |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
42141073 |
gttaactccatagccaaacaacaatgttttttactaaccaaaacacctcagataggcaccaatctaaaaatttacatacatagacacgagaatgtaattg |
42141172 |
T |
|
| Q |
118 |
ataccagtatggctacaaattttgaggataaaaatagaccgaacgggtttatttgggtacaaagcatggtccaattctggacctaactgtaagtctgtaa |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42141173 |
ataccagtatggctacaaattttgaggataaaa-tagaccgaacgggtttatttgggtacaaagcatggtccaattctggacctaactgtaagtctgtaa |
42141271 |
T |
|
| Q |
218 |
acatagcaatagcaatagcaatgtggattcactgcattgtcctttctttttcccttctagcttatacggtgctgtcnnnnnnnccaccaccaaaaacaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42141272 |
acatagcaatagcaatagcaatgtggattcactgcattgtcctttctttttcccttctagcttatacggtgctgtcaaaaaaaccaccaccaaaaacaca |
42141371 |
T |
|
| Q |
318 |
aagacaacgaggcaataacggataaaagcctcatttgtcttgcatgcacnnnnnnnnnnnnnnnngcatggacaatggtcccctactataccttacgcaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42141372 |
aagacaacgaggcaataacggataaaagcctcatttgtcttgcatgcacctctctctctatctctgcatggacaatggtcccctactataccttacgcaa |
42141471 |
T |
|
| Q |
418 |
ccta----------------attcactcactcactctcctccaacacatttcatttaactttaatctttgcatccattattattccccttcaactaccta |
501 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
42141472 |
cctaactcactcactcactcactcactcactcactctcctccaacacatttcatttaacttcaatctttgtatccattattattccccttcaactaccta |
42141571 |
T |
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| Q |
502 |
taagtatagcccccctaaact |
522 |
Q |
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||||||||||||||||||||| |
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| T |
42141572 |
taagtatagcccccctaaact |
42141592 |
T |
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